Resource
| Id | Histone_ChIP-seq/ENCSR290YLQ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR290YLQ [biosample_summary="Homo sapiens B cell female adult (27 years)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: female adult (27 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN218YHG|/analyses/ENCAN218YHG/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF144KPF|/files/ENCFF144KPF/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 30826826 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR290YLQ | float |
Histone_ChIP-seq_ENCSR290YLQ |
Histone_ChIP-seq ENCSR290YLQ [biosample_summary="Homo sapiens B cell female adult (27 years)" and target="H3K4me1"]
|
 |
[1.62, 18.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 99007105 | 3.08% | 104488 |
| chr1 | 9451771 | 3.80% | 9819 |
| chr1_KI270713v1_random | 405 | 0.99% | 1 |
| chr2 | 8231440 | 3.40% | 8326 |
| chr3 | 6284956 | 3.17% | 6700 |
| chr4 | 4065076 | 2.14% | 4421 |
| chr5 | 4992684 | 2.75% | 5217 |
| chr6 | 6607146 | 3.87% | 6924 |
| chr7 | 4617167 | 2.90% | 5076 |
| chr8 | 4484971 | 3.09% | 4569 |
| chr9 | 4229110 | 3.06% | 4356 |
| chr10 | 4815476 | 3.60% | 4934 |
| chr11 | 5097144 | 3.77% | 5085 |
| chr12 | 5131207 | 3.85% | 5480 |
| chr13 | 2263418 | 1.98% | 2391 |
| chr14 | 3370887 | 3.15% | 3466 |
| chr15 | 3276083 | 3.21% | 3420 |
| chr16 | 3437432 | 3.81% | 3594 |
| chr16_KI270728v1_random | 492 | 0.03% | 1 |
| chr17 | 4637566 | 5.57% | 4986 |
| chr17_GL000205v2_random | 4080 | 2.20% | 3 |
| chr18 | 1905706 | 2.37% | 2009 |
| chr19 | 3908185 | 6.67% | 4571 |
| chr20 | 2662675 | 4.13% | 2773 |
| chr21 | 1083977 | 2.32% | 1200 |
| chr22 | 2342851 | 4.61% | 2455 |
| chrUn_GL000219v1 | 896 | 0.50% | 1 |
| chrX | 2104304 | 1.35% | 2710 |
| 3339 contigs with no values (184026207 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 104488 | 220 | 20273 | 947.55 | 673 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF094MJC.bed.gz | 2.4 MB | 474e07823f3971ffe1421d644ecbbab8 |
| ENCFF094MJC.tabix.bed.gz | 1.1 MB | 4692add840ec626bef31d6f2546fefad |
| ENCFF094MJC.tabix.bed.gz.tbi | 265.84 KB | d4fb5ce2cf987c5a53976925a7d5970c |
| genomic_resource.yaml | 1.96 KB | 0437af0b7127f247afaf7fc2977c462d |
| statistics/ |