Resource
| Id | Histone_ChIP-seq/ENCSR290EHP |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR290EHP [biosample_summary="Homo sapiens mid-neurogenesis radial glial cells stably expressing HES5 originated from H9" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: female embryo (5 days) stably expressing C-terminal eGFP-tagged HES5 output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN042QTX|/analyses/ENCAN042QTX/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF471TCH|/files/ENCFF471TCH/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline has 24489886 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF305ESR|/files/ENCFF305ESR/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline has 33625876 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR290EHP | float |
Histone_ChIP-seq_ENCSR290EHP |
Histone_ChIP-seq ENCSR290EHP [biosample_summary="Homo sapiens mid-neurogenesis radial glial cells stably expressing HES5 originated from H9" and target="H3K4me1"]
|
 |
[1.57, 11.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 75835401 | 2.36% | 80720 |
| chr1 | 7879036 | 3.16% | 7908 |
| chr2 | 6004126 | 2.48% | 6548 |
| chr3 | 4797237 | 2.42% | 5213 |
| chr4 | 3042489 | 1.60% | 3434 |
| chr5 | 4142311 | 2.28% | 4453 |
| chr6 | 4260809 | 2.49% | 4591 |
| chr7 | 3476848 | 2.18% | 3765 |
| chr8 | 3158357 | 2.18% | 3504 |
| chr9 | 3546394 | 2.56% | 3695 |
| chr10 | 3819874 | 2.85% | 4007 |
| chr11 | 4730599 | 3.50% | 4855 |
| chr12 | 3623949 | 2.72% | 3864 |
| chr13 | 1954560 | 1.71% | 2135 |
| chr14 | 2683030 | 2.51% | 2787 |
| chr15 | 2549676 | 2.50% | 2698 |
| chr16 | 2673853 | 2.96% | 2792 |
| chr17 | 3920742 | 4.71% | 3905 |
| chr18 | 1871853 | 2.33% | 2042 |
| chr19 | 2149929 | 3.67% | 2426 |
| chr20 | 2184040 | 3.39% | 2328 |
| chr21 | 729501 | 1.56% | 803 |
| chr22 | 1833668 | 3.61% | 1910 |
| chrX | 802520 | 0.51% | 1057 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 80720 | 225 | 11943 | 939.49 | 765 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF566RVL.bed.gz | 1.74 MB | 24f1239acde35c04ad88470649687d8d |
| ENCFF566RVL.tabix.bed.gz | 846.67 KB | 88dc36d8970188973230a18b2c3df06c |
| ENCFF566RVL.tabix.bed.gz.tbi | 308.6 KB | 414ebc9b8c774d84db81efde7cbb93d9 |
| genomic_resource.yaml | 2.71 KB | 0f251875b3dd8b1d807c9a6d4c2228e1 |
| statistics/ |