type: position_score
table:
  filename: ENCFF566RVL.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: Histone_ChIP-seq_ENCSR290EHP
  column_index: 3
  type: float
  desc: signal
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'ChIP-seq ENCSR290EHP [TISSUE: Homo sapiens mid-neurogenesis radial glial
    cells stably expressing HES5 originated from H9, TARGET: H3K4me1]'
  description: '**status**: released


    **biological\_replicates**: Rep 1, Rep 2


    **summary**: female embryo (5 days) stably expressing C-terminal eGFP-tagged HES5


    **output\_type**: pseudoreplicated peaks


    **audit\_internal\_action**: Released analysis {ENCAN042QTX|/analyses/ENCAN042QTX/}
    has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/}


    **audit\_not\_compliant**: Processed alignments file {ENCFF471TCH|/files/ENCFF471TCH/}
    processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline has 24489886 usable fragments.
    The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting
    H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments.
    The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE
    ChIP-seq data standards|/data-standards/chip-seq/})


    **audit\_not\_compliant**: Processed alignments file {ENCFF305ESR|/files/ENCFF305ESR/}
    processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline has 33625876 usable fragments.
    The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting
    H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments.
    The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE
    ChIP-seq data standards|/data-standards/chip-seq/})'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR290EHP
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: female embryo (5 days) stably expressing C-terminal
      eGFP-tagged HES5
    biosample_summary: Homo sapiens mid-neurogenesis radial glial cells stably expressing
      HES5 originated from H9
    replication_type: isogenic
    biosample_ontology: /biosample-types/in_vitro_differentiated_cells_NTR_0003830/
    perturbed: false
    doi: 10.17989/ENCSR290EHP
    date_created: '2015-02-20T02:38:08.698161+00:00'
    date_released: '2016-05-20'
    submitter_comment: ''
    target: H3K4me1