Resource

Id Histone_ChIP-seq/ENCSR287VPMcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR287VPM [biosample_summary="Homo sapiens SK-N-MC" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR287VPM
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002860/
  • biosample_summary: Homo sapiens SK-N-MC
  • date_created: 2014-02-20T05:05:40.485672+00:00
  • date_released: 2016-11-14
  • doi: 10.17989/ENCSR287VPM
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR287VPM float

Histone_ChIP-seq_ENCSR287VPM
Histone_ChIP-seq ENCSR287VPM [biosample_summary="Homo sapiens SK-N-MC" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR287VPM [1.59, 56]
n
67,417,277
mean
16.3
sd
11.9

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 674172772.10% 62474
chr1 6291349 2.53% 5593
chr2 5380186 2.22% 5259
chr3 4009538 2.02% 3860
chr4 3529667 1.86% 3503
chr5 3593324 1.98% 3465
chr6 4668049 2.73% 4342
chr7 3499471 2.20% 3395
chr8 3868059 2.67% 3634
chr9 2803732 2.03% 2650
chr10 2246923 1.68% 2233
chr11 3255147 2.41% 2817
chr12 3651924 2.74% 3326
chr13 1963060 1.72% 1966
chr14 2419837 2.26% 2194
chr14_GL000009v2_random 366 0.18% 1
chr15 1990669 1.95% 1781
chr16 1822881 2.02% 1635
chr17 2979270 3.58% 2402
chr17_GL000205v2_random 2136 1.15% 3
chr18 1231957 1.53% 1224
chr19 2800766 4.78% 2236
chr20 1711698 2.66% 1571
chr21 741635 1.59% 735
chr22 1168783 2.30% 1032
chr22_KI270733v1_random 764 0.42% 1
chrUn_GL000219v1 2595 1.45% 3
chrUn_GL000220v1 576 0.36% 2
chrUn_KI270744v1 5333 3.17% 5
chrX 1777582 1.14% 1606
3337 contigs with no values (185227956 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 62474 200 22040 1079.13 727
global segment-length histogram

Files

Filename Size md5
ENCFF163LYZ.bed.gz 1.54 MB ab3995a40b77956b9623d8798789ca45
ENCFF163LYZ.tabix.bed.gz 691.74 KB a53d71f412bcc8607d02a3a75b61def3
ENCFF163LYZ.tabix.bed.gz.tbi 292.94 KB bca358b37b69ccda88f99f004213a26b
genomic_resource.yaml 1.37 KB 92afc0935aa64c376f26b1902f18709d
statistics/