Resource
| Id | Histone_ChIP-seq/ENCSR286VMZ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR286VMZ [biosample_summary="Homo sapiens layer of hippocampus tissue female adult (75 years)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (75 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN742WCW|/analyses/ENCAN742WCW/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF276IZZ|/files/ENCFF276IZZ/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 31909439 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR286VMZ | float |
Histone_ChIP-seq_ENCSR286VMZ |
Histone_ChIP-seq ENCSR286VMZ [biosample_summary="Homo sapiens layer of hippocampus tissue female adult (75 years)" and target="H3K36me3"]
|
 |
[1.83, 17] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 36920029 | 1.15% | 82676 |
| chr1 | 3759123 | 1.51% | 8364 |
| chr2 | 2263092 | 0.93% | 5499 |
| chr3 | 1998203 | 1.01% | 4748 |
| chr4 | 969630 | 0.51% | 2504 |
| chr5 | 1349233 | 0.74% | 3391 |
| chr6 | 1348575 | 0.79% | 3233 |
| chr7 | 1565400 | 0.98% | 3602 |
| chr8 | 1007999 | 0.69% | 2517 |
| chr9 | 1820255 | 1.32% | 3950 |
| chr10 | 1378769 | 1.03% | 3375 |
| chr11 | 2200553 | 1.63% | 4741 |
| chr12 | 2089694 | 1.57% | 4486 |
| chr13 | 498278 | 0.44% | 1319 |
| chr14 | 1135469 | 1.06% | 2697 |
| chr15 | 1245785 | 1.22% | 2940 |
| chr16 | 2232595 | 2.47% | 4595 |
| chr17 | 2716481 | 3.26% | 5637 |
| chr18 | 425273 | 0.53% | 1135 |
| chr19 | 3165026 | 5.40% | 5999 |
| chr20 | 1402842 | 2.18% | 3000 |
| chr21 | 457925 | 0.98% | 990 |
| chr22 | 1485348 | 2.92% | 2925 |
| chrX | 404481 | 0.26% | 1029 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 82676 | 140 | 7698 | 446.56 | 341 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF922IYA.bed.gz | 1.54 MB | 48384c0eb22b9e4fca86a40bc13cd747 |
| ENCFF922IYA.tabix.bed.gz | 791.28 KB | 63b0ca4667e7d042f2ac544f7cd2d1d7 |
| ENCFF922IYA.tabix.bed.gz.tbi | 170.44 KB | da0366aa1b6187e7327fb03f0f853074 |
| genomic_resource.yaml | 2.04 KB | 13da394886088a06006b91d51f5fc5f6 |
| statistics/ |