Resource
| Id | Histone_ChIP-seq/ENCSR285UTJ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR285UTJ [biosample_summary="Homo sapiens foreskin fibroblast male newborn" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: male newborn output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN471GWK|/analyses/ENCAN471GWK/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF187NCW|/files/ENCFF187NCW/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 27902334 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR285UTJ | float |
Histone_ChIP-seq_ENCSR285UTJ |
Histone_ChIP-seq ENCSR285UTJ [biosample_summary="Homo sapiens foreskin fibroblast male newborn" and target="H3K27me3"]
|
 |
[1.58, 27.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 212655939 | 6.61% | 247526 |
| chr1 | 22761848 | 9.14% | 24989 |
| chr2 | 17189766 | 7.10% | 20758 |
| chr3 | 11269387 | 5.68% | 14305 |
| chr4 | 5698834 | 3.00% | 7727 |
| chr5 | 9251521 | 5.10% | 11873 |
| chr6 | 8732105 | 5.11% | 11523 |
| chr7 | 9284555 | 5.83% | 10987 |
| chr8 | 8115124 | 5.59% | 10742 |
| chr9 | 10081243 | 7.28% | 11087 |
| chr10 | 12051138 | 9.01% | 14518 |
| chr11 | 14186310 | 10.50% | 14823 |
| chr12 | 8871075 | 6.66% | 10954 |
| chr13 | 3778606 | 3.30% | 5336 |
| chr14 | 6261913 | 5.85% | 7629 |
| chr15 | 8183031 | 8.02% | 9239 |
| chr16 | 9268811 | 10.26% | 9957 |
| chr17 | 14093952 | 16.93% | 13325 |
| chr18 | 3837977 | 4.78% | 5619 |
| chr19 | 9132443 | 15.58% | 9781 |
| chr20 | 9058504 | 14.06% | 9890 |
| chr21 | 2824575 | 6.05% | 3306 |
| chr22 | 7301770 | 14.37% | 7020 |
| chrX | 1413525 | 0.91% | 2129 |
| chrY | 7926 | 0.01% | 9 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 247526 | 195 | 55547 | 859.13 | 494 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF987CGS.bed.gz | 4.87 MB | 8630b5ba545a57e8d649df60b4bfee3d |
| ENCFF987CGS.tabix.bed.gz | 2.37 MB | aa460f9a4c5434ad383018e364f16500 |
| ENCFF987CGS.tabix.bed.gz.tbi | 323.49 KB | 1390ee4025b6ee184ff051df82248077 |
| genomic_resource.yaml | 1.97 KB | fc4a1d718823e9871a55cfec61898632 |
| statistics/ |