Resource
| Id | Histone_ChIP-seq/ENCSR282SNG |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR282SNG [biosample_summary="Homo sapiens H9" and target="H3K23ac"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN464KMN|/analyses/ENCAN464KMN/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF570QZQ|/files/ENCFF570QZQ/} processed by ChIP-seq ENCODE3 hg19 pipeline has 9587067 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K23ac-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF210GTN|/files/ENCFF210GTN/} processed by ChIP-seq ENCODE3 hg19 pipeline has 15929626 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K23ac-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR282SNG | float |
Histone_ChIP-seq_ENCSR282SNG |
Histone_ChIP-seq ENCSR282SNG [biosample_summary="Homo sapiens H9" and target="H3K23ac"]
|
 |
[1.62, 14.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 2857304 | 0.09% | 20749 |
| chr1 | 243523 | 0.10% | 1765 |
| chr2 | 245054 | 0.10% | 1805 |
| chr3 | 200170 | 0.10% | 1468 |
| chr4 | 170320 | 0.09% | 1272 |
| chr5 | 171821 | 0.09% | 1273 |
| chr6 | 178574 | 0.10% | 1291 |
| chr7 | 164897 | 0.10% | 1208 |
| chr8 | 138762 | 0.10% | 1019 |
| chr9 | 116642 | 0.08% | 837 |
| chr10 | 134064 | 0.10% | 957 |
| chr11 | 127053 | 0.09% | 929 |
| chr12 | 140204 | 0.11% | 1016 |
| chr13 | 93857 | 0.08% | 697 |
| chr14 | 93064 | 0.09% | 675 |
| chr15 | 84645 | 0.08% | 612 |
| chr16 | 84677 | 0.09% | 594 |
| chr17 | 91539 | 0.11% | 639 |
| chr18 | 79184 | 0.10% | 567 |
| chr19 | 56784 | 0.10% | 407 |
| chr20 | 69084 | 0.11% | 484 |
| chr21 | 32856 | 0.07% | 230 |
| chr22 | 47305 | 0.09% | 322 |
| chrX | 93225 | 0.06% | 682 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 20749 | 90 | 703 | 137.71 | 127 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF265KWT.bed.gz | 372.79 KB | a5c0d5d23c1488460c6a081e932eb38a |
| ENCFF265KWT.tabix.bed.gz | 196.45 KB | de743f6c1cf8d6de43cf556fbb6a9182 |
| ENCFF265KWT.tabix.bed.gz.tbi | 164.9 KB | b1c9a42a36bc6d1c82a633052326b283 |
| genomic_resource.yaml | 2.35 KB | 2f97fb045fa0e900931b25a232aaa42e |
| statistics/ |