Resource
| Id | Histone_ChIP-seq/ENCSR276HBK |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR276HBK [biosample_summary="Homo sapiens H9" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN235NRF|/analyses/ENCAN235NRF/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF371SZR|/files/ENCFF371SZR/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 14258661 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF804YUX|/files/ENCFF804YUX/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 17762636 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR276HBK | float |
Histone_ChIP-seq_ENCSR276HBK |
Histone_ChIP-seq ENCSR276HBK [biosample_summary="Homo sapiens H9" and target="H3K4me1"]
|
 |
[1.68, 14.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 30741783 | 0.96% | 91170 |
| chr1 | 2852877 | 1.15% | 8178 |
| chr2 | 2577122 | 1.06% | 7702 |
| chr3 | 2349872 | 1.19% | 6982 |
| chr4 | 1602808 | 0.84% | 5040 |
| chr5 | 1888385 | 1.04% | 5622 |
| chr6 | 1992390 | 1.17% | 5875 |
| chr7 | 1627705 | 1.02% | 4945 |
| chr8 | 1474283 | 1.02% | 4425 |
| chr9 | 1345238 | 0.97% | 3933 |
| chr10 | 1495162 | 1.12% | 4411 |
| chr11 | 1581779 | 1.17% | 4528 |
| chr12 | 1450864 | 1.09% | 4354 |
| chr13 | 913616 | 0.80% | 2828 |
| chr14 | 931843 | 0.87% | 2777 |
| chr15 | 1037651 | 1.02% | 2952 |
| chr16 | 868624 | 0.96% | 2534 |
| chr17 | 984635 | 1.18% | 2805 |
| chr18 | 841730 | 1.05% | 2561 |
| chr19 | 417489 | 0.71% | 1251 |
| chr20 | 715962 | 1.11% | 2095 |
| chr21 | 293939 | 0.63% | 890 |
| chr22 | 475229 | 0.94% | 1333 |
| chr22_KI270733v1_random | 277 | 0.15% | 1 |
| chrUn_GL000195v1 | 911 | 0.50% | 4 |
| chrX | 1021392 | 0.65% | 3144 |
| 3341 contigs with no values (185941832 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 91170 | 135 | 3288 | 337.19 | 290 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF123YZZ.bed.gz | 1.78 MB | fca132b06763425202232f0f03123454 |
| ENCFF123YZZ.tabix.bed.gz | 895.6 KB | cc2478c0c2eca29bb0322b91ca3135b7 |
| ENCFF123YZZ.tabix.bed.gz.tbi | 370.88 KB | ec7791975f35189a87967965fd22f4e7 |
| genomic_resource.yaml | 2.36 KB | 6d90bbb27174ee48ca8e3e127147b16a |
| statistics/ |