Resource

Id Histone_ChIP-seq/ENCSR275NCHcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR275NCH [biosample_summary="Homo sapiens PC-3" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR275NCH
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002074/
  • biosample_summary: Homo sapiens PC-3
  • date_created: 2014-02-20T05:41:34.923075+00:00
  • date_released: 2016-05-03
  • doi: 10.17989/ENCSR275NCH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR275NCH float

Histone_ChIP-seq_ENCSR275NCH
Histone_ChIP-seq ENCSR275NCH [biosample_summary="Homo sapiens PC-3" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR275NCH [1.52, 48]
n
57,613,152
mean
17
sd
10.1

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 576131521.79% 46087
chr1 5728574 2.30% 4346
chr2 4264689 1.76% 3565
chr3 3462355 1.75% 2802
chr4 2599336 1.37% 2212
chr5 2940681 1.62% 2398
chr6 3458890 2.03% 2718
chr7 2871041 1.80% 2353
chr8 2544715 1.75% 2246
chr9 2167733 1.57% 1760
chr10 2646699 1.98% 2244
chr11 3001583 2.22% 2323
chr12 3030782 2.27% 2324
chr13 1273951 1.11% 1078
chr14 1965811 1.84% 1536
chr15 1800471 1.77% 1411
chr16 1820970 2.02% 1389
chr17 2942152 3.53% 2148
chr18 1071141 1.33% 931
chr19 2924113 4.99% 2229
chr20 1548025 2.40% 1250
chr21 700468 1.50% 606
chr22 1032183 2.03% 795
chrX 1815818 1.16% 1421
chrY 971 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 46087 205 22249 1250.1 759
global segment-length histogram

Files

Filename Size md5
ENCFF042TQB.bed.gz 1.25 MB 5b8c1cbc183a885b40ae475bc84a112b
ENCFF042TQB.tabix.bed.gz 528.27 KB 3425c7d756624b33ce23d380f303ad44
ENCFF042TQB.tabix.bed.gz.tbi 229.91 KB ac0d710d96404825255a5fe65de84f3d
genomic_resource.yaml 2.02 KB e712546ecb1aac987afc498e3a5bb647
statistics/