Resource

Id Histone_ChIP-seq/ENCSR275EAGcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR275EAG [biosample_summary="Homo sapiens peripheral blood mononuclear cell male adult (39 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR275EAG
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_2000001/
  • biosample_summary: Homo sapiens peripheral blood mononuclear cell male adult (39 years)
  • date_created: 2017-03-22T16:16:54.771551+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR275EAG
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (39 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR275EAG float

Histone_ChIP-seq_ENCSR275EAG
Histone_ChIP-seq ENCSR275EAG [biosample_summary="Homo sapiens peripheral blood mononuclear cell male adult (39 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR275EAG [1.25, 14]
n
6,803,392
mean
5.96
sd
1.67

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 68033920.21% 9912
chr1 693287 0.28% 995
chr2 488007 0.20% 689
chr3 400498 0.20% 586
chr4 286664 0.15% 422
chr5 333358 0.18% 476
chr6 422085 0.25% 606
chr7 317293 0.20% 462
chr8 256270 0.18% 372
chr9 280236 0.20% 404
chr10 284788 0.21% 398
chr11 371075 0.27% 553
chr12 371071 0.28% 544
chr13 138915 0.12% 213
chr14 241075 0.23% 348
chr15 233204 0.23% 344
chr16 293967 0.33% 437
chr17 409051 0.49% 581
chr18 116538 0.14% 155
chr19 413931 0.71% 645
chr20 171034 0.27% 241
chr21 68790 0.15% 106
chr22 147938 0.29% 222
chrX 59972 0.04% 105
chrY 4345 0.01% 8
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 9912 225 3844 686.38 615
global segment-length histogram

Files

Filename Size md5
ENCFF477HMF.bed.gz 180.92 KB ca4e0f4f9dbcc49e5c97a65b8f3facfe
ENCFF477HMF.tabix.bed.gz 98.49 KB fe8b750205565c5079e6afa914d1d383
ENCFF477HMF.tabix.bed.gz.tbi 79.22 KB 82374f1bbd3f41d1ea026874a18958ac
genomic_resource.yaml 2.04 KB 9b4fcd01b97b900d206a767000446729
statistics/