Resource
| Id | Histone_ChIP-seq/ENCSR274TJB |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR274TJB [biosample_summary="Homo sapiens IMR-90" and target="H2BK15ac"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2, Rep 3 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN718VZG|/analyses/ENCAN718VZG/} has in progress subobject document {f3f80e3a-5877-4295-bf7c-757333271f33|/documents/f3f80e3a-5877-4295-bf7c-757333271f33/} audit_internal_action: Released analysis {ENCAN718VZG|/analyses/ENCAN718VZG/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: Processed alignments file {ENCFF988XSO|/files/ENCFF988XSO/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 15928811 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H2BK15ac-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF980RTX|/files/ENCFF980RTX/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 11269687 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H2BK15ac-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF510XXG|/files/ENCFF510XXG/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 11511089 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H2BK15ac-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR274TJB | float |
Histone_ChIP-seq_ENCSR274TJB |
Histone_ChIP-seq ENCSR274TJB [biosample_summary="Homo sapiens IMR-90" and target="H2BK15ac"]
|
 |
[1.57, 17.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 70395043 | 2.19% | 132782 |
| chr1 | 6275979 | 2.52% | 11697 |
| chr2 | 6930048 | 2.86% | 12789 |
| chr3 | 4712750 | 2.38% | 8942 |
| chr4 | 3250709 | 1.71% | 6825 |
| chr5 | 4600631 | 2.53% | 8573 |
| chr6 | 4343377 | 2.54% | 8749 |
| chr7 | 3351682 | 2.10% | 6615 |
| chr8 | 3738383 | 2.58% | 7221 |
| chr9 | 3222157 | 2.33% | 5915 |
| chr10 | 3439146 | 2.57% | 6322 |
| chr11 | 4069294 | 3.01% | 7428 |
| chr12 | 3474138 | 2.61% | 6736 |
| chr13 | 1894053 | 1.66% | 3782 |
| chr14 | 2238910 | 2.09% | 4051 |
| chr15 | 2741603 | 2.69% | 4847 |
| chr16 | 1914181 | 2.12% | 3295 |
| chr17 | 2797068 | 3.36% | 4947 |
| chr18 | 1695642 | 2.11% | 3300 |
| chr19 | 1147749 | 1.96% | 2241 |
| chr20 | 1751832 | 2.72% | 3077 |
| chr21 | 1078542 | 2.31% | 2027 |
| chr22 | 1095037 | 2.15% | 1941 |
| chrX | 632132 | 0.41% | 1462 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 132782 | 158 | 6632 | 530.16 | 413 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF840IQF.bed.gz | 3.18 MB | bf80b8252679d6172c58908c2e66879c |
| ENCFF840IQF.tabix.bed.gz | 1.36 MB | 9c425d3e5ffa036603cc6c47fa905be7 |
| ENCFF840IQF.tabix.bed.gz.tbi | 247.04 KB | 14d54130b59349e6fdbfada2d5ee15db |
| genomic_resource.yaml | 3.12 KB | 3910c4cd90c64feb4848f71e5ca1050a |
| statistics/ |