Resource
| Id | Histone_ChIP-seq/ENCSR271TFS |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR271TFS [biosample_summary="Homo sapiens H1" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN943BKF|/analyses/ENCAN943BKF/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF441KOL|/files/ENCFF441KOL/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 8803218 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF286FND|/files/ENCFF286FND/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 11632622 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR271TFS | float |
Histone_ChIP-seq_ENCSR271TFS |
Histone_ChIP-seq ENCSR271TFS [biosample_summary="Homo sapiens H1" and target="H3K4me1"]
|
 |
[1.93, 28.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 32317673 | 1.00% | 167518 |
| chr1 | 3149667 | 1.27% | 15685 |
| chr1_KI270713v1_random | 461 | 1.13% | 2 |
| chr2 | 2543335 | 1.05% | 13436 |
| chr3 | 2014227 | 1.02% | 10949 |
| chr4 | 1353596 | 0.71% | 7746 |
| chr5 | 1713280 | 0.94% | 9208 |
| chr6 | 1789143 | 1.05% | 9750 |
| chr7 | 1679705 | 1.05% | 8929 |
| chr8 | 1395569 | 0.96% | 7464 |
| chr9 | 1477288 | 1.07% | 7460 |
| chr10 | 1636958 | 1.22% | 8392 |
| chr11 | 1857531 | 1.38% | 9113 |
| chr12 | 1489632 | 1.12% | 7862 |
| chr13 | 782263 | 0.68% | 4374 |
| chr14 | 1014778 | 0.95% | 5198 |
| chr15 | 1115537 | 1.09% | 5710 |
| chr16 | 1181866 | 1.31% | 5739 |
| chr17 | 1707602 | 2.05% | 7822 |
| chr18 | 733424 | 0.91% | 4069 |
| chr19 | 1043574 | 1.78% | 4878 |
| chr20 | 913639 | 1.42% | 4557 |
| chr21 | 342868 | 0.73% | 1778 |
| chr22 | 823261 | 1.62% | 3810 |
| chrUn_GL000195v1 | 586 | 0.32% | 4 |
| chrX | 547590 | 0.35% | 3510 |
| chrY | 10293 | 0.02% | 73 |
| 3340 contigs with no values (128853444 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 167518 | 100 | 2053 | 192.92 | 157 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF694ENI.bed.gz | 3.14 MB | 8882b18f3df46a5594984cd8f58e29d3 |
| ENCFF694ENI.tabix.bed.gz | 1.56 MB | b05091c352f6a43f5ce0106c0db5fdd8 |
| ENCFF694ENI.tabix.bed.gz.tbi | 458.46 KB | 9ff8e7194ba3114f1bb5ed677c5ec599 |
| genomic_resource.yaml | 2.36 KB | 35fdcf58a7720b39f9e71ae38b4394d6 |
| statistics/ |