Resource

Id Histone_ChIP-seq/ENCSR263ELQcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR263ELQ [biosample_summary="Homo sapiens iPS DF 6.9" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR263ELQ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0007098/
  • biosample_summary: Homo sapiens iPS DF 6.9
  • date_created: 2015-09-16T19:16:58.068323+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR263ELQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR263ELQ float

Histone_ChIP-seq_ENCSR263ELQ
Histone_ChIP-seq ENCSR263ELQ [biosample_summary="Homo sapiens iPS DF 6.9" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR263ELQ [1.7, 50]
n
28,059,547
mean
15.2
sd
7.26

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 280595470.87% 27660
chr1 2718517 1.09% 2665
chr2 1882453 0.78% 1821
chr3 1519068 0.77% 1401
chr4 1115324 0.59% 1052
chr5 1353450 0.75% 1296
chr6 1702276 1.00% 1636
chr7 1331191 0.84% 1301
chr8 1069897 0.74% 966
chr9 1135222 0.82% 1099
chr10 1157593 0.87% 1126
chr11 1513043 1.12% 1473
chr12 1385118 1.04% 1310
chr13 577476 0.50% 546
chr14 937179 0.88% 897
chr15 884419 0.87% 862
chr16 1128959 1.25% 1153
chr17 1621865 1.95% 1659
chr18 494533 0.62% 443
chr19 1914898 3.27% 2226
chr20 766883 1.19% 763
chr21 260250 0.56% 243
chr22 580004 1.14% 641
chrX 978542 0.63% 1053
chrY 31387 0.05% 28
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 27660 140 7881 1014.44 868
global segment-length histogram

Files

Filename Size md5
ENCFF334CSR.bed.gz 761.8 KB 648523eb7186a49cd8f3a758ab81d435
ENCFF334CSR.tabix.bed.gz 318.99 KB 0118a9005d5220652e98280f64cd4c3b
ENCFF334CSR.tabix.bed.gz.tbi 146.59 KB 6187044d46f3a8029b6f7aeb38e86c16
genomic_resource.yaml 2.04 KB 023557c2228d772f6755bc1144c68b7f
statistics/