type: position_score
table:
  filename: ENCFF541LUL.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: Histone_ChIP-seq_ENCSR262VXI
  column_index: 3
  type: float
  desc: 'Histone_ChIP-seq ENCSR262VXI [biosample_summary="Homo sapiens mesenchymal stem cell female adult and female adult (59 years), originated from adipose tissue" and target="H3K27me3"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'Histone_ChIP-seq ENCSR262VXI [biosample_summary="Homo sapiens mesenchymal stem cell female adult and female adult (59 years), originated from adipose tissue" and target="H3K27me3"]'
  description: '**status**: released


    **biological\_replicates**: Rep 1, Rep 2


    **summary**: female adult (59 years) female adult


    **output\_type**: replicated peaks


    **audit\_internal\_action**: Archived analysis {ENCAN711WNQ|/analyses/ENCAN711WNQ/}
    has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/}


    **audit\_not\_compliant**: Processed redacted alignments file {ENCFF071TXV|/files/ENCFF071TXV/}
    processed by ChIP-seq ENCODE3 GRCh38 pipeline has 24934250 usable fragments. The
    minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting
    H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments.
    The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE
    ChIP-seq data standards|/data-standards/chip-seq/})


    **audit\_not\_compliant**: Processed redacted alignments file {ENCFF097OLC|/files/ENCFF097OLC/}
    processed by ChIP-seq ENCODE3 GRCh38 pipeline has 23602327 usable fragments. The
    minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting
    H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments.
    The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE
    ChIP-seq data standards|/data-standards/chip-seq/})


    **audit\_warning**: PBC1 (PCR Bottlenecking Coefficient 1, M1/M\_distinct) is
    the ratio of the number of genomic locations where exactly one read maps uniquely
    (M1) to the number of genomic locations where some reads map (M\_distinct). A
    PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate
    bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking.
    PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted
    alignments file {ENCFF097OLC|/files/ENCFF097OLC/} processed by ChIP-seq ENCODE3
    GRCh38 pipeline was generated from a library with PBC1 value of 0.80.


    **audit\_warning**: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio
    of the number of genomic locations where exactly one read maps uniquely (M1) to
    the number of genomic locations where two reads map uniquely (M2). A PBC2 value
    in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3
    - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended,
    but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF097OLC|/files/ENCFF097OLC/}
    processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with
    PBC2 value of 4.96.'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR262VXI
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: female adult (59 years) female adult
    biosample_summary: Homo sapiens mesenchymal stem cell female adult and female
      adult (59 years), originated from adipose tissue
    replication_type: anisogenic
    biosample_ontology: /biosample-types/primary_cell_CL_0000134/
    perturbed: false
    doi: 10.17989/ENCSR262VXI
    date_created: '2015-09-15T19:51:06.022236+00:00'
    date_released: '2013-07-31'
    submitter_comment: Experiment 0e051a43-450a-407d-bd84-427249faf0df merged into
      base.
    target: H3K27me3