Resource

Id Histone_ChIP-seq/ENCSR258UUXcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR258UUX [biosample_summary="Homo sapiens vagina tissue female adult (53 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR258UUX
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000996/
  • biosample_summary: Homo sapiens vagina tissue female adult (53 years)
  • date_created: 2016-10-19T23:03:54.017700+00:00
  • date_released: 2016-11-02
  • doi: 10.17989/ENCSR258UUX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: female adult (53 years)
  • status: released
  • submitter_comment: The lab has submitted new control fastqs, prompting new peak and signal calls for its downstream experiments.
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR258UUX float

Histone_ChIP-seq_ENCSR258UUX
Histone_ChIP-seq ENCSR258UUX [biosample_summary="Homo sapiens vagina tissue female adult (53 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR258UUX [1.37, 36.3]
n
43,359,486
mean
14.7
sd
7.37

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 433594861.35% 29901
chr1 4258278 1.71% 2888
chr2 2961881 1.22% 2010
chr3 2399629 1.21% 1610
chr4 1695593 0.89% 1151
chr5 2022269 1.11% 1362
chr6 2411466 1.41% 1640
chr7 2084828 1.31% 1443
chr8 1582361 1.09% 1097
chr9 1864526 1.35% 1316
chr10 1853995 1.39% 1339
chr11 2419500 1.79% 1548
chr12 2324889 1.74% 1569
chr13 879816 0.77% 626
chr14 1392420 1.30% 922
chr15 1405384 1.38% 953
chr16 1720946 1.91% 1234
chr17 2590366 3.11% 1770
chr18 743478 0.93% 544
chr19 2885482 4.92% 2062
chr20 1125021 1.75% 811
chr21 448580 0.96% 349
chr22 1050192 2.07% 741
chrX 1236764 0.79% 912
chrY 1822 <0.01% 4
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 29901 210 19897 1450.1 1175
global segment-length histogram

Files

Filename Size md5
ENCFF661YCK.bed.gz 792.14 KB ac3baf63866db54f30a346f5dd8965b2
ENCFF661YCK.tabix.bed.gz 342.42 KB 36d2d3ab2ce4cfc7b8d87166bb21e919
ENCFF661YCK.tabix.bed.gz.tbi 173.09 KB 32e10e70555b001067815627712dfced
genomic_resource.yaml 2.08 KB 5939cf3d5651add9d3f71f85f85c0efd
statistics/