Resource
| Id | Histone_ChIP-seq/ENCSR258TUP |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR258TUP [biosample_summary="Homo sapiens BLaER1 72 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H4K20me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: 72 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1 output_type: peaks audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-joint-replicate-peak-calling-step-v-1|/analysis-steps/crg-chip-seq-joint-replicate-peak-calling-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-alignment-and-filtering-step-v-1|/analysis-steps/crg-chip-seq-alignment-and-filtering-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-bed-to-bigbed-conversion-step-v-1|/analysis-steps/crg-chip-seq-bed-to-bigbed-conversion-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-peak-calling-and-signal-generation-step-v-1|/analysis-steps/crg-chip-seq-peak-calling-and-signal-generation-step-v-1/} audit_internal_action: Released analysis step version {crg-chip-seq-peak-calling-and-signal-generation-step-v-1-0|/analysis-step-versions/crg-chip-seq-peak-calling-and-signal-generation-step-v-1-0/} has in progress subobject analysis step {crg-chip-seq-peak-calling-and-signal-generation-step-v-1|/analysis-steps/crg-chip-seq-peak-calling-and-signal-generation-step-v-1/} |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR258TUP | float |
Histone_ChIP-seq_ENCSR258TUP |
Histone_ChIP-seq ENCSR258TUP [biosample_summary="Homo sapiens BLaER1 72 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H4K20me1"]
|
 |
[1.22, 34.4] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 142264067 | 4.42% | 140800 |
| chr1 | 13218013 | 5.31% | 13690 |
| chr1_KI270713v1_random | 250 | 0.61% | 1 |
| chr2 | 9793458 | 4.04% | 9879 |
| chr3 | 7527650 | 3.80% | 7595 |
| chr3_GL000221v1_random | 292 | 0.19% | 1 |
| chr4 | 4700235 | 2.47% | 5002 |
| chr5 | 7282643 | 4.01% | 7242 |
| chr6 | 5448821 | 3.19% | 5490 |
| chr7 | 7507109 | 4.71% | 7638 |
| chr8 | 6904527 | 4.76% | 6586 |
| chr9 | 6212454 | 4.49% | 6480 |
| chr10 | 6952709 | 5.20% | 6825 |
| chr11 | 7260367 | 5.37% | 6908 |
| chr12 | 6698817 | 5.03% | 6587 |
| chr13 | 2484342 | 2.17% | 2608 |
| chr14 | 4421219 | 4.13% | 4325 |
| chr14_GL000194v1_random | 2284 | 1.19% | 6 |
| chr14_KI270724v1_random | 323 | 0.82% | 1 |
| chr15 | 4956643 | 4.86% | 5052 |
| chr15_KI270727v1_random | 322 | 0.07% | 1 |
| chr16 | 7854906 | 8.69% | 7009 |
| chr17 | 9294778 | 11.16% | 8816 |
| chr17_GL000205v2_random | 347 | 0.19% | 1 |
| chr18 | 1911713 | 2.38% | 2190 |
| chr19 | 7300880 | 12.46% | 5680 |
| chr20 | 4766606 | 7.40% | 4531 |
| chr21 | 1750755 | 3.75% | 1550 |
| chr22 | 4759142 | 9.36% | 4434 |
| chr22_KI270731v1_random | 357 | 0.24% | 1 |
| chr22_KI270733v1_random | 282 | 0.16% | 1 |
| chrUn_GL000219v1 | 4659 | 2.60% | 6 |
| chrUn_KI270438v1 | 2369 | 2.11% | 4 |
| chrX | 3244544 | 2.08% | 4659 |
| chrY | 251 | <0.01% | 1 |
| 3332 contigs with no values (127393851 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 140800 | 250 | 113564 | 1010.4 | 459 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF218XDE.bed.gz | 2.61 MB | 8ca70a2e72dc882d8a06a02b5fefecdf |
| ENCFF218XDE.tabix.bed.gz | 1.31 MB | e1740341d7f8adfc8f50c8cc910f5314 |
| ENCFF218XDE.tabix.bed.gz.tbi | 195.01 KB | 472830385c312bd224050dabf87715ab |
| genomic_resource.yaml | 3.12 KB | 71c895977f4ce4c28389ee3d3f7928bd |
| statistics/ |