Resource

Id Histone_ChIP-seq/ENCSR256KRNcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR256KRN [biosample_summary="Homo sapiens parathyroid adenoma tissue male adult (62 years)" and target="H2AFZ"]
Description
Labels
  • accession: ENCSR256KRN
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_NTR_0001226/
  • biosample_summary: Homo sapiens parathyroid adenoma tissue male adult (62 years)
  • date_created: 2014-02-20T05:41:51.660224+00:00
  • date_released: 2017-12-01
  • doi: 10.17989/ENCSR256KRN
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (62 years)
  • status: released
  • submitter_comment: Read – level (FASTQ and BAM files) data will be shared with collaborating investigators who are funded by the NHGRI ENCODE project. The data will be made available using a password protected system maintained by the ENCODE data coordination center at Stanford University (https://www.encodeproject.org/), and will be clearly identified as protected human subject data. The read level data will never be released to the general scientific community nor to the general public.
  • target: H2AFZ

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR256KRN float

Histone_ChIP-seq_ENCSR256KRN
Histone_ChIP-seq ENCSR256KRN [biosample_summary="Homo sapiens parathyroid adenoma tissue male adult (62 years)" and target="H2AFZ"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR256KRN [1.81, 15.4]
n
16,420,411
mean
5.3
sd
1.69

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 164204110.51% 29182
chr1 1779660 0.71% 3115
chr2 1200518 0.50% 2065
chr3 1007264 0.51% 1712
chr4 687187 0.36% 1161
chr5 826976 0.46% 1412
chr6 1052890 0.62% 1747
chr7 778819 0.49% 1390
chr8 659882 0.45% 1129
chr9 663832 0.48% 1211
chr10 760897 0.57% 1344
chr11 408221 0.30% 913
chr12 904490 0.68% 1568
chr13 366304 0.32% 640
chr14 635495 0.59% 1111
chr15 460164 0.45% 851
chr16 631672 0.70% 1187
chr17 955861 1.15% 1720
chr18 299037 0.37% 545
chr19 1080271 1.84% 1981
chr20 502039 0.78% 875
chr21 149516 0.32% 267
chr22 377115 0.74% 715
chrX 221982 0.14% 501
chrY 10319 0.02% 22
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 29182 185 3332 562.69 487
global segment-length histogram

Files

Filename Size md5
ENCFF110ISY.bed.gz 620.49 KB 748bb39b960d25e37907dadedb8b8c3a
ENCFF110ISY.tabix.bed.gz 302.42 KB 48da4f2d8ba37fe0887cb819c67e28cd
ENCFF110ISY.tabix.bed.gz.tbi 149.45 KB fb1ac7898900e9006de82cedd2b07cd1
genomic_resource.yaml 2.03 KB 0409be88f0237780b30c089b9327e378
statistics/