Resource

Id Histone_ChIP-seq/ENCSR254NLCcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR254NLC [biosample_summary="Homo sapiens neuronal stem cell originated from H1" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR254NLC
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0000047/
  • biosample_summary: Homo sapiens neuronal stem cell originated from H1
  • date_created: 2015-10-01T07:17:14.450171+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR254NLC
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: male embryo
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR254NLC float

Histone_ChIP-seq_ENCSR254NLC
Histone_ChIP-seq ENCSR254NLC [biosample_summary="Homo sapiens neuronal stem cell originated from H1" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR254NLC [1.57, 13.9]
n
66,747,653
mean
3.69
sd
1.15

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 667476532.07% 211248
chr1 6787805 2.73% 20161
chr2 5390920 2.23% 17556
chr3 4009231 2.02% 13270
chr4 2547915 1.34% 9031
chr5 3559628 1.96% 12063
chr6 3482318 2.04% 11766
chr7 3083138 1.93% 10211
chr8 2886801 1.99% 9615
chr9 3156677 2.28% 9856
chr10 3504664 2.62% 11070
chr11 4157016 3.08% 12267
chr12 3133326 2.35% 9999
chr13 1625811 1.42% 5699
chr14 2236623 2.09% 6935
chr15 2381773 2.34% 7391
chr16 2471608 2.74% 7526
chr17 3463637 4.16% 9589
chr18 1548332 1.93% 5303
chr19 1932485 3.30% 5418
chr20 2034022 3.16% 6251
chr21 682272 1.46% 2221
chr22 1798874 3.54% 5019
chrX 860103 0.55% 2981
chrY 12674 0.02% 50
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 211248 120 4064 315.97 244
global segment-length histogram

Files

Filename Size md5
ENCFF904BDC.bed.gz 4.44 MB f570da62c7ac14a1352437c895e35ee5
ENCFF904BDC.tabix.bed.gz 2.09 MB 6ab95f3a98c4b3a09341a4439b468240
ENCFF904BDC.tabix.bed.gz.tbi 533.28 KB 59ac558deff4fad89b6ef8c18bf33d37
genomic_resource.yaml 2.19 KB 68899cde08ae5045c0e7ec8d7d9c2489
statistics/