Resource

Id Histone_ChIP-seq/ENCSR250YFTcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR250YFT [biosample_summary="Homo sapiens BLaER1 120 hours after the\ \ sample was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10\ \ ng/mL CSF1" and target="H3K4me2"]
Description
Labels
  • accession: ENCSR250YFT
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0030018/
  • biosample_summary: Homo sapiens BLaER1 120 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1
  • date_created: 2022-01-27T21:50:25.327357+00:00
  • date_released: 2022-05-10
  • doi: 10.17989/ENCSR250YFT
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: 120 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1
  • status: released
  • submitter_comment:
  • target: H3K4me2

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR250YFT float

Histone_ChIP-seq_ENCSR250YFT
Histone_ChIP-seq ENCSR250YFT [biosample_summary="Homo sapiens BLaER1 120 hours after the\ \ sample was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10\ \ ng/mL CSF1" and target="H3K4me2"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR250YFT [1.47, 28.4]
n
252,890,358
mean
8.9
sd
4.85

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2528903587.86% 186729
chr1 24203459 9.72% 17415
chr1_KI270712v1_random 4613 2.62% 7
chr1_KI270713v1_random 5205 12.77% 8
chr2 19715609 8.14% 15074
chr3 15312420 7.72% 11675
chr3_GL000221v1_random 859 0.55% 3
chr4 10568853 5.56% 8780
chr5 13251140 7.30% 10126
chr6 14037201 8.22% 10670
chr7 12483204 7.83% 9872
chr8 12215336 8.42% 8918
chr9 10610541 7.67% 7984
chr9_KI270717v1_random 259 0.65% 1
chr9_KI270718v1_random 250 0.66% 1
chr9_KI270719v1_random 380 0.21% 1
chr10 12470223 9.32% 9331
chr11 12889484 9.54% 9080
chr12 12628262 9.48% 9088
chr13 5388521 4.71% 4528
chr14 8253566 7.71% 5881
chr14_GL000194v1_random 1834 0.96% 3
chr14_KI270723v1_random 1404 3.68% 2
chr14_KI270725v1_random 423 0.24% 1
chr14_KI270726v1_random 255 0.58% 1
chr15 8729289 8.56% 6138
chr15_KI270727v1_random 950 0.21% 2
chr16 9747816 10.79% 6707
chr16_KI270728v1_random 1997 0.11% 2
chr17 13143334 15.79% 8360
chr17_GL000205v2_random 27198 14.65% 15
chr17_KI270729v1_random 296 0.11% 1
chr18 4789814 5.96% 3863
chr19 10113386 17.25% 6125
chr20 7579443 11.76% 5416
chr21 3371728 7.22% 2482
chr22 5512347 10.85% 3846
chr22_KI270731v1_random 2180 1.45% 3
chr22_KI270733v1_random 4658 2.59% 7
chr22_KI270735v1_random 2936 6.86% 3
chrUn_GL000195v1 5119 2.80% 8
chrUn_GL000214v1 259 0.19% 1
chrUn_GL000216v2 703 0.40% 2
chrUn_GL000219v1 16378 9.14% 13
chrUn_GL000220v1 853 0.53% 2
chrUn_KI270519v1 250 0.18% 1
chrUn_KI270744v1 5748 3.41% 6
chrUn_KI270746v1 763 1.15% 2
chrUn_KI270751v1 756 0.50% 2
chrUn_KI270753v1 3796 6.03% 4
chrUn_KI270755v1 346 0.94% 1
chrX 5783487 3.71% 5265
chrY 1227 <0.01% 2
3314 contigs with no values (123381317 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 186729 250 51710 1354.32 780
global segment-length histogram

Files

Filename Size md5
ENCFF117GEN.bed.gz 4.26 MB 05b10b5ba0e00b6e82d99bc2624d9ab8
ENCFF117GEN.tabix.bed.gz 1.92 MB 07f82cebd8b2cc375c01f4981fec2740
ENCFF117GEN.tabix.bed.gz.tbi 411.24 KB 2797b097cd6976980fecbd507bb8935c
genomic_resource.yaml 3.12 KB 3289a30b0898385ae28d647813ef59cf
statistics/