Resource
| Id | Histone_ChIP-seq/ENCSR244XWL |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR244XWL [biosample_summary="Homo sapiens CD14-positive monocyte male adult (21 years)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (21 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN514RGJ|/analyses/ENCAN514RGJ/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN514RGJ|/analyses/ENCAN514RGJ/} has in progress subobject document {a45c793a-f6c7-4aac-8dc1-3c6faf33ffed|/documents/a45c793a-f6c7-4aac-8dc1-3c6faf33ffed/} audit_not_compliant: Processed alignments file {ENCFF164MUD|/files/ENCFF164MUD/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 20118416 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR244XWL | float |
Histone_ChIP-seq_ENCSR244XWL |
Histone_ChIP-seq ENCSR244XWL [biosample_summary="Homo sapiens CD14-positive monocyte male adult (21 years)" and target="H3K36me3"]
|
 |
[1.88, 24.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 134424420 | 4.18% | 146249 |
| chr1 | 13332788 | 5.36% | 14089 |
| chr2 | 10638230 | 4.39% | 11730 |
| chr3 | 8610916 | 4.34% | 9752 |
| chr4 | 5566111 | 2.93% | 6427 |
| chr5 | 7464841 | 4.11% | 8014 |
| chr6 | 5888533 | 3.45% | 6791 |
| chr7 | 6264754 | 3.93% | 7310 |
| chr8 | 4661576 | 3.21% | 5333 |
| chr9 | 5598848 | 4.05% | 5900 |
| chr10 | 5835444 | 4.36% | 6651 |
| chr11 | 6811944 | 5.04% | 6827 |
| chr12 | 7635910 | 5.73% | 7973 |
| chr13 | 2923407 | 2.56% | 3335 |
| chr14 | 4700475 | 4.39% | 4988 |
| chr15 | 5208987 | 5.11% | 5619 |
| chr16 | 6001046 | 6.64% | 6172 |
| chr17 | 7574463 | 9.10% | 7841 |
| chr18 | 2245893 | 2.79% | 2673 |
| chr19 | 5776685 | 9.85% | 6080 |
| chr20 | 4064582 | 6.31% | 4002 |
| chr21 | 1683158 | 3.60% | 1753 |
| chr22 | 3371857 | 6.64% | 3206 |
| chrX | 2445561 | 1.57% | 3598 |
| chrY | 118411 | 0.21% | 185 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 146249 | 170 | 38303 | 919.15 | 545 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF272UYW.bed.gz | 2.84 MB | c3a99e5c79826d8e3179787d0c55ba0e |
| ENCFF272UYW.tabix.bed.gz | 1.38 MB | 6635df2940ae190809e22907ae2099e9 |
| ENCFF272UYW.tabix.bed.gz.tbi | 148.27 KB | 0e5993e49ea7f8517a3f67672a0413fd |
| genomic_resource.yaml | 2.22 KB | 3b0027e216e5b48f3fee78a943103764 |
| statistics/ |