Resource
| Id | Histone_ChIP-seq/ENCSR241PXI |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR241PXI [biosample_summary="Homo sapiens myoepithelial cell of mammary gland female adult (36 years)" and target="H3K9me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (36 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN513RWJ|/analyses/ENCAN513RWJ/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted unfiltered alignments file {ENCFF404OZU|/files/ENCFF404OZU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 16197270 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR241PXI | float |
Histone_ChIP-seq_ENCSR241PXI |
Histone_ChIP-seq ENCSR241PXI [biosample_summary="Homo sapiens myoepithelial cell of mammary gland female adult (36 years)" and target="H3K9me3"]
|
 |
[1.98, 22] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 43653214 | 1.36% | 110961 |
| chr1 | 2716388 | 1.09% | 7213 |
| chr1_KI270706v1_random | 720 | 0.41% | 2 |
| chr1_KI270707v1_random | 120 | 0.37% | 1 |
| chr1_KI270708v1_random | 507 | 0.40% | 2 |
| chr1_KI270709v1_random | 5188 | 7.76% | 16 |
| chr1_KI270712v1_random | 295 | 0.17% | 2 |
| chr2 | 3063880 | 1.27% | 8278 |
| chr2_KI270716v1_random | 2995 | 1.95% | 7 |
| chr3 | 2481512 | 1.25% | 6765 |
| chr4 | 2567207 | 1.35% | 6956 |
| chr4_GL000008v2_random | 4886 | 2.33% | 5 |
| chr5 | 2833596 | 1.56% | 7286 |
| chr5_GL000208v1_random | 1645 | 1.77% | 6 |
| chr6 | 2121261 | 1.24% | 6018 |
| chr7 | 2476527 | 1.55% | 6527 |
| chr8 | 2021606 | 1.39% | 5540 |
| chr9 | 1583089 | 1.14% | 4086 |
| chr9_KI270719v1_random | 844 | 0.48% | 3 |
| chr10 | 2056005 | 1.54% | 5268 |
| chr11 | 1749880 | 1.30% | 4732 |
| chr12 | 2079006 | 1.56% | 5237 |
| chr13 | 1119102 | 0.98% | 3141 |
| chr14 | 1136117 | 1.06% | 3079 |
| chr14_GL000194v1_random | 852 | 0.44% | 4 |
| chr14_GL000225v1_random | 10746 | 5.09% | 34 |
| chr14_KI270722v1_random | 2766 | 1.43% | 7 |
| chr14_KI270725v1_random | 174 | 0.10% | 1 |
| chr15 | 1109462 | 1.09% | 2773 |
| chr16 | 1109194 | 1.23% | 2626 |
| chr16_KI270728v1_random | 190 | 0.01% | 1 |
| chr17 | 769005 | 0.92% | 1939 |
| chr17_GL000205v2_random | 3955 | 2.13% | 11 |
| chr17_KI270729v1_random | 30977 | 11.03% | 77 |
| chr17_KI270730v1_random | 16061 | 14.27% | 31 |
| chr18 | 864654 | 1.08% | 2395 |
| chr19 | 3684307 | 6.29% | 5378 |
| chr20 | 768330 | 1.19% | 2015 |
| chr21 | 545692 | 1.17% | 1285 |
| chr22 | 420406 | 0.83% | 1047 |
| chr22_KI270732v1_random | 2505 | 6.03% | 6 |
| chr22_KI270733v1_random | 1870 | 1.04% | 8 |
| chr22_KI270735v1_random | 2694 | 6.29% | 6 |
| chr22_KI270736v1_random | 10442 | 5.74% | 13 |
| chr22_KI270737v1_random | 264 | 0.25% | 1 |
| chr22_KI270738v1_random | 10341 | 10.41% | 29 |
| chrUn_GL000195v1 | 647 | 0.35% | 2 |
| chrUn_GL000214v1 | 2631 | 1.91% | 6 |
| chrUn_GL000216v2 | 36631 | 20.74% | 67 |
| chrUn_GL000218v1 | 318 | 0.20% | 2 |
| chrUn_GL000219v1 | 2374 | 1.32% | 7 |
| chrUn_GL000220v1 | 210 | 0.13% | 1 |
| chrUn_GL000224v1 | 6536 | 3.64% | 17 |
| chrUn_KI270320v1 | 128 | 2.90% | 1 |
| chrUn_KI270337v1 | 525 | 46.83% | 3 |
| chrUn_KI270435v1 | 3977 | 4.28% | 11 |
| chrUn_KI270438v1 | 20253 | 18.00% | 47 |
| chrUn_KI270442v1 | 70780 | 18.05% | 144 |
| chrUn_KI270465v1 | 334 | 18.83% | 1 |
| chrUn_KI270466v1 | 702 | 56.93% | 2 |
| chrUn_KI270467v1 | 1398 | 35.66% | 2 |
| chrUn_KI270468v1 | 567 | 13.98% | 2 |
| chrUn_KI270512v1 | 1048 | 4.62% | 1 |
| chrUn_KI270517v1 | 857 | 26.34% | 1 |
| chrUn_KI270519v1 | 7447 | 5.39% | 23 |
| chrUn_KI270522v1 | 197 | 3.47% | 1 |
| chrUn_KI270538v1 | 509 | 0.56% | 3 |
| chrUn_KI270584v1 | 202 | 4.48% | 1 |
| chrUn_KI270589v1 | 2396 | 5.39% | 1 |
| chrUn_KI270590v1 | 458 | 9.78% | 2 |
| chrUn_KI270591v1 | 1469 | 25.35% | 3 |
| chrUn_KI270742v1 | 471 | 0.25% | 2 |
| chrUn_KI270743v1 | 340 | 0.16% | 2 |
| chrUn_KI270744v1 | 2491 | 1.48% | 7 |
| chrUn_KI270746v1 | 121 | 0.18% | 1 |
| chrUn_KI270747v1 | 842 | 0.42% | 2 |
| chrUn_KI270749v1 | 192 | 0.12% | 1 |
| chrUn_KI270750v1 | 306 | 0.21% | 1 |
| chrUn_KI270751v1 | 1834 | 1.22% | 4 |
| chrUn_KI270754v1 | 493 | 1.23% | 3 |
| chrUn_KI270756v1 | 2875 | 3.61% | 7 |
| chrUn_KI270757v1 | 5173 | 7.26% | 12 |
| chrX | 4071707 | 2.61% | 10683 |
| chrY | 16512 | 0.03% | 28 |
| 3283 contigs with no values (120401748 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 110961 | 120 | 35952 | 393.41 | 304 |
×
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF660ILB.bed.gz | 1.84 MB | 87c4f7764f2b596bfdcf5118413c1f75 |
| ENCFF660ILB.tabix.bed.gz | 1000.1 KB | b69ca5bba6c4f1b458e1e16615a9d449 |
| ENCFF660ILB.tabix.bed.gz.tbi | 385.29 KB | cee870e01e449c1f256ca22facb48e82 |
| genomic_resource.yaml | 2.06 KB | db7227412e335c126f6494e53b01687c |
| statistics/ |