Resource
| Id | Histone_ChIP-seq/ENCSR240LEQ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR240LEQ [biosample_summary="Homo sapiens subcutaneous abdominal adipose tissue tissue nuclear fraction female adult (41 years)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (41 years) nuclear fraction output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN506RZT|/analyses/ENCAN506RZT/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF851LYY|/files/ENCFF851LYY/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 17769458 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR240LEQ | float |
Histone_ChIP-seq_ENCSR240LEQ |
Histone_ChIP-seq ENCSR240LEQ [biosample_summary="Homo sapiens subcutaneous abdominal adipose tissue tissue nuclear fraction female adult (41 years)" and target="H3K36me3"]
|
 |
[1.66, 28.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 63167922 | 1.96% | 99262 |
| chr1 | 6605491 | 2.65% | 10232 |
| chr1_KI270711v1_random | 319 | 0.76% | 1 |
| chr2 | 6080238 | 2.51% | 9383 |
| chr3 | 4734367 | 2.39% | 7470 |
| chr4 | 3490494 | 1.84% | 5316 |
| chr5 | 4055103 | 2.23% | 6080 |
| chr6 | 3604578 | 2.11% | 5594 |
| chr7 | 2680473 | 1.68% | 4371 |
| chr8 | 2665681 | 1.84% | 4111 |
| chr9 | 2829202 | 2.04% | 4417 |
| chr10 | 2961761 | 2.21% | 4744 |
| chr11 | 3143899 | 2.33% | 4923 |
| chr12 | 3524904 | 2.64% | 5656 |
| chr13 | 1756340 | 1.54% | 2678 |
| chr14 | 2337540 | 2.18% | 3609 |
| chr15 | 2593221 | 2.54% | 4010 |
| chr16 | 1447593 | 1.60% | 2412 |
| chr17 | 2238074 | 2.69% | 3722 |
| chr18 | 1366556 | 1.70% | 2164 |
| chr19 | 1618715 | 2.76% | 2333 |
| chr20 | 1274624 | 1.98% | 2197 |
| chr21 | 568288 | 1.22% | 890 |
| chr22 | 537727 | 1.06% | 1005 |
| chrUn_GL000219v1 | 1041 | 0.58% | 3 |
| chrX | 1051693 | 0.67% | 1941 |
| 3341 contigs with no values (186083092 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 99262 | 180 | 8863 | 636.38 | 502 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF698KHI.bed.gz | 1.87 MB | 17c5a5682c470b13c46f81ee4a4542e8 |
| ENCFF698KHI.tabix.bed.gz | 954.68 KB | 55ca449991ecc6423a8d04788b3bdee3 |
| ENCFF698KHI.tabix.bed.gz.tbi | 178.89 KB | e366767e805d27643b2dc90eed9e9278 |
| genomic_resource.yaml | 2.17 KB | 93f84f8a2c112c4c2aee8e00ef3f7f4e |
| statistics/ |