Resource

Id Histone_ChIP-seq/ENCSR239SNRcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR239SNR [biosample_summary="Homo sapiens CD4-positive, alpha-beta memory T cell" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR239SNR
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000897/
  • biosample_summary: Homo sapiens CD4-positive, alpha-beta memory T cell
  • date_created: 2015-09-15T19:49:06.908280+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR239SNR
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR239SNR float

Histone_ChIP-seq_ENCSR239SNR
Histone_ChIP-seq ENCSR239SNR [biosample_summary="Homo sapiens CD4-positive, alpha-beta memory T cell" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR239SNR [1.69, 10.5]
n
10,260,278
mean
4.38
sd
1.18

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 102602780.32% 17289
chr1 598653 0.24% 1033
chr2 626170 0.26% 1205
chr3 509808 0.26% 976
chr4 600473 0.32% 1148
chr5 578632 0.32% 1097
chr6 338544 0.20% 675
chr7 600042 0.38% 1035
chr8 445903 0.31% 862
chr9 334928 0.24% 595
chr10 381226 0.28% 687
chr11 436402 0.32% 856
chr12 499642 0.37% 780
chr13 271731 0.24% 577
chr14 301157 0.28% 598
chr15 218644 0.21% 325
chr16 452892 0.50% 754
chr17 198088 0.24% 311
chr18 229087 0.29% 461
chr19 2068984 3.53% 2348
chr20 151374 0.23% 281
chr21 157068 0.34% 250
chr22 113249 0.22% 179
chrX 78785 0.05% 152
chrY 68796 0.12% 104
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 17289 220 16238 593.46 464
global segment-length histogram

Files

Filename Size md5
ENCFF610SBU.bed.gz 338.78 KB f5e667c9b75a8ca50d12e89d9a794cd3
ENCFF610SBU.tabix.bed.gz 174.21 KB 6ad89deede60392e16bced61da7b4b5c
ENCFF610SBU.tabix.bed.gz.tbi 106.3 KB 6931b82e90f3d463a3be216d418f4c09
genomic_resource.yaml 1.46 KB 5c86cc108967e35be0121f91472c2161
statistics/