Resource
| Id | Histone_ChIP-seq/ENCSR238WMO |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR238WMO [biosample_summary="Homo sapiens neuronal stem cell originated from H9" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: female embryo (5 days) output_type: replicated peaks audit_internal_action: Released analysis {ENCAN075JFE|/analyses/ENCAN075JFE/} has in progress subobject document {8b5ce86d-de7b-4731-af63-389c438bc55e|/documents/8b5ce86d-de7b-4731-af63-389c438bc55e/} audit_internal_action: Released analysis {ENCAN075JFE|/analyses/ENCAN075JFE/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF508MTC|/files/ENCFF508MTC/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 32338538 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF246DZP|/files/ENCFF246DZP/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 28358516 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR238WMO | float |
Histone_ChIP-seq_ENCSR238WMO |
Histone_ChIP-seq ENCSR238WMO [biosample_summary="Homo sapiens neuronal stem cell originated from H9" and target="H3K36me3"]
|
 |
[1.52, 25] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 237111721 | 7.37% | 161576 |
| chr1 | 22942824 | 9.22% | 15179 |
| chr2 | 19656931 | 8.12% | 13323 |
| chr3 | 14886855 | 7.51% | 10031 |
| chr4 | 10671540 | 5.61% | 7294 |
| chr5 | 12483168 | 6.88% | 8040 |
| chr6 | 11300786 | 6.62% | 7751 |
| chr7 | 11892055 | 7.46% | 8517 |
| chr8 | 9283917 | 6.40% | 6426 |
| chr9 | 10474567 | 7.57% | 7052 |
| chr10 | 9951817 | 7.44% | 6736 |
| chr11 | 11400254 | 8.44% | 7749 |
| chr12 | 13114326 | 9.84% | 8443 |
| chr13 | 5437001 | 4.75% | 3778 |
| chr14 | 8010728 | 7.48% | 5441 |
| chr15 | 9076204 | 8.90% | 6157 |
| chr16 | 8596800 | 9.52% | 5901 |
| chr17 | 12467704 | 14.97% | 8443 |
| chr18 | 4934931 | 6.14% | 3322 |
| chr19 | 11291695 | 19.26% | 7743 |
| chr20 | 6342973 | 9.84% | 4107 |
| chr21 | 2650858 | 5.68% | 1729 |
| chr22 | 5364090 | 10.56% | 3769 |
| chrX | 4879697 | 3.13% | 4645 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 161576 | 160 | 93888 | 1467.49 | 769 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF133ROS.bed.gz | 3.62 MB | 352545a6652e092b4e4dcef303ded514 |
| ENCFF133ROS.tabix.bed.gz | 1.63 MB | 3e774d3f46b0f27c82f0627e3426caa7 |
| ENCFF133ROS.tabix.bed.gz.tbi | 156.04 KB | fee44e993ee483e1474b053a0f692014 |
| genomic_resource.yaml | 2.83 KB | f7b96b726298ebe8745c98c4c675bf7f |
| statistics/ |