Resource

Id Histone_ChIP-seq/ENCSR238SWAcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR238SWA [biosample_summary="Homo sapiens gastroesophageal sphincter tissue male adult (54 years)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR238SWA
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0004550/
  • biosample_summary: Homo sapiens gastroesophageal sphincter tissue male adult (54 years)
  • date_created: 2017-12-06T21:18:17.245850+00:00
  • date_released: 2019-02-12
  • doi: 10.17989/ENCSR238SWA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (54 years)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR238SWA float

Histone_ChIP-seq_ENCSR238SWA
Histone_ChIP-seq ENCSR238SWA [biosample_summary="Homo sapiens gastroesophageal sphincter tissue male adult (54 years)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR238SWA [1.61, 6.47]
n
16,859,042
mean
3.22
sd
0.648

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 168590420.52% 34297
chr1 1819839 0.73% 3635
chr2 1512835 0.62% 3130
chr3 1698362 0.86% 3295
chr4 1023312 0.54% 2092
chr5 987048 0.54% 1987
chr6 996462 0.58% 2077
chr7 804438 0.50% 1690
chr8 712983 0.49% 1472
chr9 794028 0.57% 1578
chr10 981615 0.73% 2011
chr11 882787 0.65% 1735
chr12 908226 0.68% 1920
chr13 462497 0.40% 946
chr14 622697 0.58% 1248
chr15 644837 0.63% 1308
chr16 294619 0.33% 606
chr17 535360 0.64% 1077
chr18 260465 0.32% 567
chr19 182168 0.31% 390
chr20 345531 0.54% 695
chr21 119980 0.26% 274
chr22 223644 0.44% 448
chrX 45309 0.03% 116
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 34297 190 4819 491.56 400
global segment-length histogram

Files

Filename Size md5
ENCFF348MLJ.bed.gz 667.58 KB 0db2bebc26b00599aeeaa336811cb908
ENCFF348MLJ.tabix.bed.gz 340.45 KB c6829a20eb7e5b447a1de6a18e8be6d6
ENCFF348MLJ.tabix.bed.gz.tbi 139.2 KB fc3225c3f27df6958a46968d075a88c9
genomic_resource.yaml 1.76 KB 8d652b945346a35d763dc126e26d65d7
statistics/