Resource

Id Histone_ChIP-seq/ENCSR237QFJcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR237QFJ [biosample_summary="Homo sapiens small intestine tissue male embryo (108 days)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR237QFJ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002108/
  • biosample_summary: Homo sapiens small intestine tissue male embryo (108 days)
  • date_created: 2015-09-16T21:42:46.207656+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR237QFJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (108 days)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR237QFJ float

Histone_ChIP-seq_ENCSR237QFJ
Histone_ChIP-seq ENCSR237QFJ [biosample_summary="Homo sapiens small intestine tissue male embryo (108 days)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR237QFJ [1.79, 95.9]
n
38,571,181
mean
32.8
sd
18.4

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 385711811.20% 29922
chr1 3850617 1.55% 2979
chr2 2591298 1.07% 2032
chr3 2167298 1.09% 1597
chr4 1619502 0.85% 1199
chr5 1782571 0.98% 1285
chr6 2270982 1.33% 1701
chr7 1918831 1.20% 1519
chr8 1413832 0.97% 1110
chr9 1572158 1.14% 1283
chr10 1611315 1.20% 1255
chr11 2166992 1.60% 1655
chr12 1988098 1.49% 1473
chr13 772138 0.68% 614
chr14 1248656 1.17% 928
chr15 1208054 1.18% 950
chr16 1502989 1.66% 1223
chr17 2283587 2.74% 1786
chr18 645493 0.80% 543
chr19 2540540 4.33% 2039
chr20 960558 1.49% 769
chr21 360548 0.77% 308
chr22 832010 1.64% 700
chrX 1216048 0.78% 950
chrY 47066 0.08% 24
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 29922 180 10519 1289.06 1015.5
global segment-length histogram

Files

Filename Size md5
ENCFF510ZKS.bed.gz 810.45 KB 28b5689c8673614c9227b4f974bf58ef
ENCFF510ZKS.tabix.bed.gz 344.92 KB bafe791ebe27d2e2d810cc94d5088e26
ENCFF510ZKS.tabix.bed.gz.tbi 157.86 KB 4f63aee458130c4289d0a7bca0ce8066
genomic_resource.yaml 1.73 KB aa4aa37c27f3dee1ab886945368355e4
statistics/