Resource

Id Histone_ChIP-seq/ENCSR235KRXcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR235KRX [biosample_summary="Homo sapiens with squamous cell carcinoma; skin epidermis tissue male adult (75 years)" and target="H3K27ac"]
Description
Labels
  • accession: ENCSR235KRX
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001003/
  • biosample_summary: Homo sapiens with squamous cell carcinoma; skin epidermis tissue male adult (75 years)
  • date_created: 2020-07-02T16:40:31.976630+00:00
  • date_released: 2020-09-10
  • doi: 10.17989/ENCSR235KRX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (75 years) with squamous cell carcinoma
  • status: released
  • submitter_comment:
  • target: H3K27ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR235KRX float

Histone_ChIP-seq_ENCSR235KRX
Histone_ChIP-seq ENCSR235KRX [biosample_summary="Homo sapiens with squamous cell carcinoma; skin epidermis tissue male adult (75 years)" and target="H3K27ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR235KRX [1.78, 46.5]
n
76,577,583
mean
9.15
sd
6.31

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 765775832.38% 52104
chr1 8106623 3.26% 5338
chr2 5913163 2.44% 4199
chr3 4573127 2.31% 3122
chr4 2363024 1.24% 1755
chr5 3622325 2.00% 2515
chr6 4352253 2.55% 3065
chr7 3171052 1.99% 2257
chr8 2821809 1.94% 2099
chr9 3443958 2.49% 2306
chr10 3673588 2.75% 2557
chr11 4206345 3.11% 2607
chr12 4029869 3.02% 2586
chr13 1494583 1.31% 1124
chr14 2761091 2.58% 1750
chr15 2575387 2.53% 1747
chr16 3043593 3.37% 2097
chr17 4473362 5.37% 2887
chr18 1450443 1.80% 1111
chr19 3889637 6.64% 2400
chr20 2297381 3.56% 1543
chr21 1051643 2.25% 751
chr22 1932046 3.80% 1260
chrX 1273824 0.82% 972
chrY 57457 0.10% 56
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 52104 265 24161 1469.71 1083
global segment-length histogram

Files

Filename Size md5
ENCFF594VVB.bed.gz 1.2 MB 66c048159cb0c313b0b20b28fb4ece78
ENCFF594VVB.tabix.bed.gz 564.73 KB e7cdfbae3a061522097ac9a14a35edcb
ENCFF594VVB.tabix.bed.gz.tbi 205.43 KB e4b963e642cdf3f8bb8498fc41cd50d1
genomic_resource.yaml 1.87 KB d49166c578f65b87b7b5ab8ae90c1179
statistics/