Resource

Id Histone_ChIP-seq/ENCSR235APDcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR235APD [biosample_summary="Homo sapiens iPS-18a" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR235APD
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0007105/
  • biosample_summary: Homo sapiens iPS-18a
  • date_created: 2015-09-15T19:51:32.441642+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR235APD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR235APD float

Histone_ChIP-seq_ENCSR235APD
Histone_ChIP-seq ENCSR235APD [biosample_summary="Homo sapiens iPS-18a" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR235APD [1.75, 14.4]
n
100,713,593
mean
4.96
sd
1.59

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1007135933.13% 136898
chr1 8899451 3.57% 11863
chr2 8470690 3.50% 11523
chr3 7631967 3.85% 10157
chr4 5717549 3.01% 7858
chr5 6241450 3.44% 8292
chr6 6571240 3.85% 8796
chr7 5568436 3.49% 7494
chr8 4872315 3.36% 6687
chr9 4341462 3.14% 5797
chr10 4953275 3.70% 6693
chr11 5058199 3.74% 6830
chr12 4908475 3.68% 6704
chr13 3199344 2.80% 4250
chr14 3165505 2.96% 4317
chr15 3281542 3.22% 4317
chr16 2686870 2.97% 3819
chr17 3239715 3.89% 4639
chr18 2846917 3.54% 3768
chr19 1290475 2.20% 2189
chr20 2308821 3.58% 3185
chr21 1116248 2.39% 1553
chr22 1439271 2.83% 2036
chrUn_GL000195v1 2654 1.45% 2
chrX 2901722 1.86% 4129
3342 contigs with no values (186121604 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 136898 220 11022 735.68 576
global segment-length histogram

Files

Filename Size md5
ENCFF729IXP.bed.gz 2.83 MB a79350e577981f13d819df25ba190cc2
ENCFF729IXP.tabix.bed.gz 1.37 MB 996dcb58a1ba675fcd45db6e42a5fe96
ENCFF729IXP.tabix.bed.gz.tbi 448.13 KB 019f61664b7bbb4598ca449bb1d3a352
genomic_resource.yaml 1.88 KB e982a6e5f4ffdb10920d7e05e4b5ba54
statistics/