Resource

Id Histone_ChIP-seq/ENCSR231FDFcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR231FDF [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR231FDF
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000625/
  • biosample_summary: Homo sapiens CD8-positive, alpha-beta T cell
  • date_created: 2015-09-15T19:48:45.586360+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR231FDF
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: anisogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment: Experiment 0d92dd54-cfae-4c73-962b-257c332c8990 merged into base.
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR231FDF float

Histone_ChIP-seq_ENCSR231FDF
Histone_ChIP-seq ENCSR231FDF [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR231FDF [1.74, 34.9]
n
37,978,031
mean
11.2
sd
5.61

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 379780311.18% 30549
chr1 3845487 1.54% 3063
chr2 2706713 1.12% 2208
chr3 2020191 1.02% 1579
chr4 1335027 0.70% 1075
chr5 1744260 0.96% 1293
chr6 2241304 1.31% 1709
chr7 1755703 1.10% 1453
chr8 1264916 0.87% 1022
chr9 1458532 1.05% 1215
chr10 1558717 1.16% 1246
chr11 2085800 1.54% 1565
chr12 2048890 1.54% 1635
chr13 785397 0.69% 628
chr14 1470996 1.37% 1159
chr15 1183169 1.16% 950
chr16 1470453 1.63% 1233
chr17 2354105 2.83% 1887
chr18 556696 0.69% 469
chr19 2619464 4.47% 2259
chr20 975296 1.51% 807
chr21 408680 0.87% 355
chr22 913689 1.80% 756
chrX 1124621 0.72% 943
chrY 49925 0.09% 40
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 30549 225 17995 1243.18 988
global segment-length histogram

Files

Filename Size md5
ENCFF785IPD.bed.gz 814.27 KB 060e7f570a85110b7d5ed045842d15a5
ENCFF785IPD.tabix.bed.gz 347.66 KB 4199d4926f331e54634f0c2176f63287
ENCFF785IPD.tabix.bed.gz.tbi 154.95 KB 59f42ee872dece853e6276ea2ffc2f41
genomic_resource.yaml 2.03 KB efff230e59334a387c4fb27c12951553
statistics/