Resource

Id Histone_ChIP-seq/ENCSR230VEMcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR230VEM [biosample_summary="Homo sapiens heart left ventricle tissue male child (3 years)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR230VEM
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002084/
  • biosample_summary: Homo sapiens heart left ventricle tissue male child (3 years)
  • date_created: 2015-10-01T07:17:11.056812+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR230VEM
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male child (3 years)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR230VEM float

Histone_ChIP-seq_ENCSR230VEM
Histone_ChIP-seq ENCSR230VEM [biosample_summary="Homo sapiens heart left ventricle tissue male child (3 years)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR230VEM [1.66, 12.4]
n
23,771,448
mean
4.57
sd
1.18

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 237714480.74% 56296
chr1 2358064 0.95% 5499
chr2 2126245 0.88% 5006
chr3 2050965 1.03% 4889
chr4 1098870 0.58% 2787
chr5 1587294 0.87% 3835
chr6 1497917 0.88% 3675
chr7 1060277 0.67% 2663
chr8 1053177 0.73% 2549
chr9 987736 0.71% 2322
chr10 1391027 1.04% 3242
chr11 1234155 0.91% 2837
chr12 1145154 0.86% 2719
chr13 709507 0.62% 1719
chr14 801917 0.75% 1832
chr15 930578 0.91% 2112
chr16 548731 0.61% 1259
chr17 810372 0.97% 1817
chr18 548118 0.68% 1369
chr19 387537 0.66% 834
chr20 619692 0.96% 1362
chr21 199876 0.43% 496
chr22 457305 0.90% 1008
chrUn_GL000195v1 294 0.16% 1
chrX 163051 0.10% 452
chrY 3589 0.01% 12
3341 contigs with no values (128894189 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 56296 160 3722 422.26 359
global segment-length histogram

Files

Filename Size md5
ENCFF769TKN.bed.gz 1.11 MB f27106dee3103be14c12df6863dba5ac
ENCFF769TKN.tabix.bed.gz 557.24 KB bbc939ecde29b2a6d13682bca00952e7
ENCFF769TKN.tabix.bed.gz.tbi 210.79 KB adde175be5004354c9694f30f8f93976
genomic_resource.yaml 2.0 KB 18b224fc5e67c30386c5255d9f071423
statistics/