Resource

Id Histone_ChIP-seq/ENCSR229QYRcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR229QYR [biosample_summary="Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR229QYR
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000895/
  • biosample_summary: Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell
  • date_created: 2015-09-15T19:48:34.505686+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR229QYR
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: anisogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment: The raw data from at least one replicate is not available to the ENCODE consortium.
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR229QYR float

Histone_ChIP-seq_ENCSR229QYR
Histone_ChIP-seq ENCSR229QYR [biosample_summary="Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR229QYR [1.55, 11.4]
n
26,517,963
mean
4.18
sd
1.27

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 265179630.82% 33338
chr1 1643431 0.66% 2178
chr2 1628435 0.67% 2276
chr3 1359852 0.69% 1914
chr4 1419625 0.75% 1918
chr5 1594975 0.88% 2132
chr6 1078034 0.63% 1573
chr7 1668142 1.05% 2158
chr8 1175366 0.81% 1635
chr9 972483 0.70% 1303
chr10 1037467 0.78% 1352
chr11 1012650 0.75% 1493
chr12 1316281 0.99% 1533
chr13 619613 0.54% 942
chr14 751436 0.70% 1079
chr15 703558 0.69% 847
chr16 1081643 1.20% 1392
chr17 556286 0.67% 684
chr18 471172 0.59% 692
chr19 4786510 8.17% 3985
chr20 456467 0.71% 614
chr21 364954 0.78% 493
chr22 308256 0.61% 395
chrX 445966 0.29% 654
chrY 65361 0.11% 96
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 33338 223 37021 795.43 597
global segment-length histogram

Files

Filename Size md5
ENCFF981AJI.bed.gz 687.36 KB ae2a6c123679c79536aaabe81413da5b
ENCFF981AJI.tabix.bed.gz 341.59 KB 96a93c50a12d2af0065bb5d4efdf760a
ENCFF981AJI.tabix.bed.gz.tbi 170.46 KB e03f10a8fb026578986bee4d605965aa
genomic_resource.yaml 1.6 KB e14c918c860762ca488950f177d860d3
statistics/