Resource
| Id | Histone_ChIP-seq/ENCSR219MYH |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR219MYH [biosample_summary="Homo sapiens IMR-90" and target="H3K9ac"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN873BXY|/analyses/ENCAN873BXY/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF051ZKE|/files/ENCFF051ZKE/} processed by ChIP-seq ENCODE3 hg19 pipeline has 9377134 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF581JOH|/files/ENCFF581JOH/} processed by ChIP-seq ENCODE3 hg19 pipeline has 10141659 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR219MYH | float |
Histone_ChIP-seq_ENCSR219MYH |
Histone_ChIP-seq ENCSR219MYH [biosample_summary="Homo sapiens IMR-90" and target="H3K9ac"]
|
 |
[1.58, 47.4] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 33487561 | 1.04% | 60287 |
| chr1 | 3173227 | 1.27% | 5701 |
| chr2 | 2594215 | 1.07% | 4813 |
| chr3 | 1979590 | 1.00% | 3590 |
| chr4 | 1300050 | 0.68% | 2446 |
| chr5 | 1801591 | 0.99% | 3238 |
| chr6 | 1930766 | 1.13% | 3502 |
| chr7 | 1524954 | 0.96% | 2717 |
| chr8 | 1315465 | 0.91% | 2492 |
| chr9 | 1467401 | 1.06% | 2649 |
| chr10 | 1433817 | 1.07% | 2639 |
| chr11 | 1997375 | 1.48% | 3511 |
| chr12 | 1823617 | 1.37% | 3144 |
| chr13 | 689267 | 0.60% | 1319 |
| chr14 | 1071033 | 1.00% | 1880 |
| chr15 | 1215990 | 1.19% | 2201 |
| chr16 | 1269880 | 1.41% | 2279 |
| chr17 | 1936290 | 2.33% | 3277 |
| chr18 | 570885 | 0.71% | 1090 |
| chr19 | 1670300 | 2.85% | 2878 |
| chr20 | 853688 | 1.32% | 1532 |
| chr21 | 365930 | 0.78% | 709 |
| chr22 | 732269 | 1.44% | 1294 |
| chrX | 769961 | 0.49% | 1386 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 60287 | 130 | 12973 | 555.47 | 388 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF562YIY.bed.gz | 1.53 MB | 742895190aecea8ba92127d4582819b1 |
| ENCFF562YIY.tabix.bed.gz | 657.44 KB | 87761a13611fb90f6a8d0e3a3c334aa7 |
| ENCFF562YIY.tabix.bed.gz.tbi | 201.87 KB | 7367bf5d6261215c3e053ce14b637a49 |
| genomic_resource.yaml | 2.35 KB | 5c49ae572cac6abfacd8d0777a16e3f5 |
| statistics/ |