Resource
| Id | Histone_ChIP-seq/ENCSR218OEZ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR218OEZ [biosample_summary="Homo sapiens T-cell male adult (21 years)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (21 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN059ZNI|/analyses/ENCAN059ZNI/} has in progress subobject document {a43588d7-9b12-4f65-94b1-e43f02b792b1|/documents/a43588d7-9b12-4f65-94b1-e43f02b792b1/} audit_internal_action: Released analysis {ENCAN059ZNI|/analyses/ENCAN059ZNI/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF737JXT|/files/ENCFF737JXT/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 22687458 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR218OEZ | float |
Histone_ChIP-seq_ENCSR218OEZ |
Histone_ChIP-seq ENCSR218OEZ [biosample_summary="Homo sapiens T-cell male adult (21 years)" and target="H3K4me1"]
|
 |
[1.92, 69.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 106561022 | 3.31% | 122333 |
| chr1 | 10646074 | 4.28% | 11924 |
| chr2 | 7956870 | 3.29% | 9695 |
| chr3 | 5612469 | 2.83% | 7221 |
| chr4 | 2989390 | 1.57% | 4063 |
| chr5 | 4601404 | 2.53% | 5707 |
| chr6 | 5710827 | 3.34% | 7187 |
| chr7 | 4774421 | 3.00% | 5950 |
| chr8 | 3798109 | 2.62% | 4677 |
| chr9 | 4258282 | 3.08% | 4592 |
| chr10 | 4865490 | 3.64% | 5642 |
| chr11 | 5656457 | 4.19% | 5956 |
| chr12 | 5115422 | 3.84% | 6105 |
| chr13 | 2083288 | 1.82% | 2857 |
| chr14 | 3990034 | 3.73% | 4509 |
| chr15 | 3517599 | 3.45% | 4079 |
| chr16 | 5011015 | 5.55% | 4996 |
| chr17 | 7085633 | 8.51% | 6943 |
| chr18 | 1639235 | 2.04% | 2192 |
| chr19 | 6692396 | 11.42% | 6036 |
| chr20 | 3298565 | 5.12% | 3602 |
| chr21 | 1315173 | 2.82% | 1498 |
| chr22 | 3291954 | 6.48% | 3159 |
| chrX | 2519580 | 1.61% | 3518 |
| chrY | 131335 | 0.23% | 225 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 122333 | 175 | 29788 | 871.07 | 584 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF918KOW.bed.gz | 2.79 MB | 7b26a29b7eba8f22206ace26a950accc |
| ENCFF918KOW.tabix.bed.gz | 1.25 MB | defa2b2c8335c500541e534bee095fc4 |
| ENCFF918KOW.tabix.bed.gz.tbi | 258.02 KB | 9afbb045bc9cf034c42cdcf2c16671c2 |
| genomic_resource.yaml | 2.17 KB | 95f856fc22ad531f53cbfc18f5af9ddc |
| statistics/ |