Resource
| Id | Histone_ChIP-seq/ENCSR218BPG |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR218BPG [biosample_summary="Homo sapiens adrenal gland tissue male embryo (97 days)" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male embryo (97 days) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN428MYJ|/analyses/ENCAN428MYJ/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN428MYJ|/analyses/ENCAN428MYJ/} has in progress subobject document {f61f0c3d-0b47-4e66-aaa9-e27e770299bc|/documents/f61f0c3d-0b47-4e66-aaa9-e27e770299bc/} audit_not_compliant: Processed alignments file {ENCFF228HLZ|/files/ENCFF228HLZ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 32575363 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR218BPG | float |
Histone_ChIP-seq_ENCSR218BPG |
Histone_ChIP-seq ENCSR218BPG [biosample_summary="Homo sapiens adrenal gland tissue male embryo (97 days)" and target="H3K27me3"]
|
 |
[1.82, 64.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 126078508 | 3.92% | 188817 |
| chr1 | 13024164 | 5.23% | 18941 |
| chr2 | 8572187 | 3.54% | 14264 |
| chr3 | 4558572 | 2.30% | 7945 |
| chr4 | 3834075 | 2.02% | 5639 |
| chr5 | 5877146 | 3.24% | 9398 |
| chr6 | 5494710 | 3.22% | 9434 |
| chr7 | 6511033 | 4.09% | 9593 |
| chr8 | 5357472 | 3.69% | 8369 |
| chr9 | 5648133 | 4.08% | 7304 |
| chr10 | 7867030 | 5.88% | 12535 |
| chr11 | 8447931 | 6.25% | 11942 |
| chr12 | 5846999 | 4.39% | 8880 |
| chr13 | 2230625 | 1.95% | 3769 |
| chr14 | 3206360 | 3.00% | 4842 |
| chr15 | 4310998 | 4.23% | 7301 |
| chr16 | 5708130 | 6.32% | 8176 |
| chr17 | 7889531 | 9.48% | 10248 |
| chr18 | 2724825 | 3.39% | 4733 |
| chr19 | 6023517 | 10.28% | 7508 |
| chr20 | 5512743 | 8.55% | 7893 |
| chr21 | 1777284 | 3.80% | 2674 |
| chr22 | 4510300 | 8.88% | 5559 |
| chrX | 1113897 | 0.71% | 1819 |
| chrY | 30846 | 0.05% | 51 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 188817 | 185 | 23197 | 667.73 | 422 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF852DFJ.bed.gz | 3.81 MB | e0398a0ff62fb9db057c79c1ae0d16d4 |
| ENCFF852DFJ.tabix.bed.gz | 1.82 MB | 85d0421abb2cb641df924714c6ae87b6 |
| ENCFF852DFJ.tabix.bed.gz.tbi | 311.82 KB | e97a8880ac9b6d65b584a55649fcbb10 |
| genomic_resource.yaml | 2.21 KB | 6858d7338d47c914a23f680dae687eed |
| statistics/ |