Resource
| Id | Histone_ChIP-seq/ENCSR216YPQ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR216YPQ [biosample_summary="Homo sapiens heart right ventricle tissue male adult (73 years)" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (73 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN799RCG|/analyses/ENCAN799RCG/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF187SGX|/files/ENCFF187SGX/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF187SGX|/files/ENCFF187SGX/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.65. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR216YPQ | float |
Histone_ChIP-seq_ENCSR216YPQ |
Histone_ChIP-seq ENCSR216YPQ [biosample_summary="Homo sapiens heart right ventricle tissue male adult (73 years)" and target="H3K4me3"]
|
 |
[1.68, 52.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 59797817 | 1.86% | 33669 |
| chr1 | 5880963 | 2.36% | 3258 |
| chr2 | 4110615 | 1.70% | 2381 |
| chr3 | 3492837 | 1.76% | 1919 |
| chr4 | 2546383 | 1.34% | 1426 |
| chr5 | 2967054 | 1.63% | 1619 |
| chr6 | 3526863 | 2.06% | 1970 |
| chr7 | 2931760 | 1.84% | 1694 |
| chr8 | 2373454 | 1.64% | 1385 |
| chr9 | 2512797 | 1.82% | 1450 |
| chr10 | 2729485 | 2.04% | 1589 |
| chr11 | 3145663 | 2.33% | 1707 |
| chr12 | 3188324 | 2.39% | 1696 |
| chr13 | 1365884 | 1.19% | 807 |
| chr14 | 1843429 | 1.72% | 1022 |
| chr15 | 1939723 | 1.90% | 1100 |
| chr16 | 2238811 | 2.48% | 1304 |
| chr17 | 3334290 | 4.00% | 1812 |
| chr18 | 1086703 | 1.35% | 650 |
| chr19 | 3493712 | 5.96% | 1969 |
| chr20 | 1538126 | 2.39% | 886 |
| chr21 | 574202 | 1.23% | 361 |
| chr22 | 1293467 | 2.55% | 748 |
| chrX | 1629014 | 1.04% | 892 |
| chrY | 54258 | 0.09% | 24 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 33669 | 232 | 20907 | 1776.05 | 1311 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF365SGK.bed.gz | 926.34 KB | c12aa4c6f6a3d041e4dde20d4cd02588 |
| ENCFF365SGK.tabix.bed.gz | 393.21 KB | 9264f0eab05b53bb3c5da26091cc1b64 |
| ENCFF365SGK.tabix.bed.gz.tbi | 195.92 KB | 9ab2f0200d16e8d1331599375e155be1 |
| genomic_resource.yaml | 2.79 KB | 592aa6113de547560b77bf07144e6d15 |
| statistics/ |