Resource
| Id | Histone_ChIP-seq/ENCSR216OGD |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR216OGD [biosample_summary="Homo sapiens H1" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN639CMW|/analyses/ENCAN639CMW/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF310SBN|/files/ENCFF310SBN/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 8421770 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF083QQZ|/files/ENCFF083QQZ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 5265229 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR216OGD | float |
Histone_ChIP-seq_ENCSR216OGD |
Histone_ChIP-seq ENCSR216OGD [biosample_summary="Homo sapiens H1" and target="H3K27me3"]
|
 |
[1.59, 77] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 30632263 | 0.95% | 29641 |
| chr1 | 2912777 | 1.17% | 3020 |
| chr1_KI270713v1_random | 2542 | 6.24% | 3 |
| chr2 | 2320359 | 0.96% | 2114 |
| chr3 | 1338160 | 0.67% | 1431 |
| chr4 | 1366873 | 0.72% | 1160 |
| chr5 | 1618485 | 0.89% | 1359 |
| chr6 | 1652575 | 0.97% | 1401 |
| chr7 | 1571558 | 0.99% | 1348 |
| chr8 | 1240271 | 0.85% | 1203 |
| chr9 | 1294272 | 0.94% | 1299 |
| chr10 | 1656796 | 1.24% | 1427 |
| chr11 | 1858545 | 1.38% | 1991 |
| chr12 | 1659134 | 1.24% | 1541 |
| chr13 | 634276 | 0.55% | 586 |
| chr14 | 943085 | 0.88% | 915 |
| chr15 | 1020736 | 1.00% | 973 |
| chr16 | 998755 | 1.11% | 1048 |
| chr17 | 1891935 | 2.27% | 1786 |
| chr18 | 548043 | 0.68% | 525 |
| chr19 | 1200368 | 2.05% | 1400 |
| chr20 | 956251 | 1.48% | 1081 |
| chr21 | 274777 | 0.59% | 283 |
| chr22 | 1050480 | 2.07% | 1109 |
| chr22_KI270733v1_random | 521 | 0.29% | 2 |
| chrX | 604289 | 0.39% | 618 |
| chrY | 16400 | 0.03% | 18 |
| 3340 contigs with no values (128856568 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 29641 | 180 | 109776 | 1033.44 | 489 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF084QDP.bed.gz | 573.43 KB | 5c307e315624e6cc59a1722e5f3703c6 |
| ENCFF084QDP.tabix.bed.gz | 291.46 KB | 4b82553e8f485f6fd0b1468c856e25fa |
| ENCFF084QDP.tabix.bed.gz.tbi | 105.53 KB | f7e9f4d7acc12bba847b258dee6a97ca |
| genomic_resource.yaml | 2.36 KB | 05bacbff6daa4bef79a8bd70d7ef9d0a |
| statistics/ |