Resource
| Id | Histone_ChIP-seq/ENCSR214VUB |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR214VUB [biosample_summary="Homo sapiens B cell male adult (21 years)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (21 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN725FOH|/analyses/ENCAN725FOH/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF863NMQ|/files/ENCFF863NMQ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 27020390 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR214VUB | float |
Histone_ChIP-seq_ENCSR214VUB |
Histone_ChIP-seq ENCSR214VUB [biosample_summary="Homo sapiens B cell male adult (21 years)" and target="H3K4me1"]
|
 |
[1.73, 61] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 113513034 | 3.53% | 109422 |
| chr1 | 10736544 | 4.31% | 10235 |
| chr1_KI270713v1_random | 693 | 1.70% | 2 |
| chr2 | 8884146 | 3.67% | 8604 |
| chr3 | 6843721 | 3.45% | 6983 |
| chr4 | 3982913 | 2.09% | 4363 |
| chr5 | 5194712 | 2.86% | 5268 |
| chr6 | 7155267 | 4.19% | 6948 |
| chr7 | 5133382 | 3.22% | 5425 |
| chr8 | 4931587 | 3.40% | 4656 |
| chr9 | 4859887 | 3.51% | 4534 |
| chr10 | 5359160 | 4.01% | 4968 |
| chr11 | 5962552 | 4.41% | 5385 |
| chr12 | 5744166 | 4.31% | 5678 |
| chr13 | 2365620 | 2.07% | 2487 |
| chr14 | 3932099 | 3.67% | 3706 |
| chr15 | 3766784 | 3.69% | 3508 |
| chr16 | 4570081 | 5.06% | 3943 |
| chr16_KI270728v1_random | 1979 | 0.11% | 3 |
| chr17 | 5956166 | 7.15% | 5368 |
| chr17_GL000205v2_random | 4598 | 2.48% | 2 |
| chr18 | 2071141 | 2.58% | 2061 |
| chr19 | 5563167 | 9.49% | 5137 |
| chr20 | 3348895 | 5.20% | 3061 |
| chr21 | 1268644 | 2.72% | 1248 |
| chr22 | 3098676 | 6.10% | 2647 |
| chr22_KI270733v1_random | 314 | 0.17% | 1 |
| chrUn_GL000219v1 | 864 | 0.48% | 1 |
| chrX | 2636108 | 1.69% | 3047 |
| chrY | 139168 | 0.24% | 153 |
| 3337 contigs with no values (126619020 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 109422 | 180 | 33887 | 1037.39 | 729 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF597PDX.bed.gz | 2.54 MB | 373d06d4531f7d81f02ce1b44388c11d |
| ENCFF597PDX.tabix.bed.gz | 1.13 MB | 513e1066310b2bd71360ef737ab826bd |
| ENCFF597PDX.tabix.bed.gz.tbi | 267.05 KB | 948fba833da0c6a9b6c6bab777aec28e |
| genomic_resource.yaml | 1.95 KB | becaf49eade7a599429fcaf2b38583dc |
| statistics/ |