Resource

Id Histone_ChIP-seq/ENCSR213SMKcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR213SMK [biosample_summary="Homo sapiens sigmoid colon tissue male child (3 years)" and target="H3K27ac"]
Description
Labels
  • accession: ENCSR213SMK
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001159/
  • biosample_summary: Homo sapiens sigmoid colon tissue male child (3 years)
  • date_created: 2015-10-01T07:34:58.081394+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR213SMK
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male child (3 years)
  • status: released
  • submitter_comment:
  • target: H3K27ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR213SMK float

Histone_ChIP-seq_ENCSR213SMK
Histone_ChIP-seq ENCSR213SMK [biosample_summary="Homo sapiens sigmoid colon tissue male child (3 years)" and target="H3K27ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR213SMK [1.4, 60]
n
71,143,398
mean
10.3
sd
6.66

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 711433982.21% 118807
chr1 7336575 2.95% 11738
chr1_KI270713v1_random 376 0.92% 2
chr2 5280414 2.18% 9243
chr3 4031844 2.03% 7253
chr4 2310713 1.21% 4373
chr5 3375905 1.86% 5740
chr6 3890102 2.28% 6977
chr7 2966243 1.86% 5185
chr8 2606209 1.80% 4804
chr9 3230596 2.33% 5465
chr10 3426784 2.56% 5812
chr11 4074141 3.02% 6217
chr12 3507134 2.63% 5760
chr13 1363500 1.19% 2501
chr14 2697948 2.52% 4350
chr15 2483249 2.43% 4157
chr16 2963184 3.28% 4760
chr17 4394356 5.28% 6567
chr18 1119755 1.39% 2123
chr19 3556352 6.07% 5053
chr20 2158215 3.35% 3572
chr21 877469 1.88% 1513
chr22 1939694 3.82% 2827
chrM 357 2.15% 1
chrUn_GL000219v1 944 0.53% 2
chrUn_KI270442v1 242 0.06% 1
chrX 1496114 0.96% 2704
chrY 54983 0.10% 107
3338 contigs with no values (128448512 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 118807 130 14419 598.81 404
global segment-length histogram

Files

Filename Size md5
ENCFF077GUP.bed.gz 2.7 MB 50ae67996340f4ea38fbf45c9659555c
ENCFF077GUP.tabix.bed.gz 1.21 MB 33b668a66dfddfba003c0a7ec43f0b8d
ENCFF077GUP.tabix.bed.gz.tbi 266.8 KB 3f834af79a08ad200c746f88b1d7eb8c
genomic_resource.yaml 1.5 KB 8568ce4888379c0f0320c0d2f1b17a26
statistics/