Resource

Id Histone_ChIP-seq/ENCSR208WDYcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR208WDY [biosample_summary="Homo sapiens upper lobe of left lung tissue female adult (53 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR208WDY
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0008952/
  • biosample_summary: Homo sapiens upper lobe of left lung tissue female adult (53 years)
  • date_created: 2017-01-24T04:30:17.512181+00:00
  • date_released: 2017-01-27
  • doi: 10.17989/ENCSR208WDY
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (53 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR208WDY float

Histone_ChIP-seq_ENCSR208WDY
Histone_ChIP-seq ENCSR208WDY [biosample_summary="Homo sapiens upper lobe of left lung tissue female adult (53 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR208WDY [1.49, 19.1]
n
18,941,113
mean
7.57
sd
2.83

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 189411130.59% 22174
chr1 1872767 0.75% 2217
chr2 1286899 0.53% 1477
chr3 1089956 0.55% 1195
chr4 742127 0.39% 835
chr5 911451 0.50% 998
chr6 1108462 0.65% 1288
chr7 909376 0.57% 1088
chr8 688597 0.47% 760
chr9 792548 0.57% 958
chr10 797801 0.60% 903
chr11 1052016 0.78% 1206
chr12 1003935 0.75% 1143
chr13 389760 0.34% 436
chr14 623399 0.58% 740
chr15 609101 0.60% 702
chr16 793317 0.88% 954
chr17 1143808 1.37% 1372
chr18 304149 0.38% 348
chr19 1257856 2.15% 1549
chr20 498105 0.77% 578
chr21 182371 0.39% 231
chr22 430864 0.85% 516
chrX 452448 0.29% 680
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 22174 165 6367 854.2 736
global segment-length histogram

Files

Filename Size md5
ENCFF434YJW.bed.gz 520.22 KB a96d8bb93a57d921482a73e0e661bc46
ENCFF434YJW.tabix.bed.gz 241.19 KB ca89984d9ab4dffc48d716250b8d9e64
ENCFF434YJW.tabix.bed.gz.tbi 122.79 KB 6d6f124f229f3115d652085d64e03dd3
genomic_resource.yaml 1.55 KB 1fd692a33b3ad34e7459d41c05f3b22a
statistics/