Resource
| Id | Histone_ChIP-seq/ENCSR207ZIA |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR207ZIA [biosample_summary="Homo sapiens adrenal gland tissue male embryo (97 days)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: male embryo (97 days) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN294KTK|/analyses/ENCAN294KTK/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN294KTK|/analyses/ENCAN294KTK/} has in progress subobject document {e6f346f8-94e9-489f-ad07-fc5051d02b50|/documents/e6f346f8-94e9-489f-ad07-fc5051d02b50/} audit_not_compliant: Processed alignments file {ENCFF795QMF|/files/ENCFF795QMF/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 27099088 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR207ZIA | float |
Histone_ChIP-seq_ENCSR207ZIA |
Histone_ChIP-seq ENCSR207ZIA [biosample_summary="Homo sapiens adrenal gland tissue male embryo (97 days)" and target="H3K4me1"]
|
 |
[1.94, 34.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 121771737 | 3.78% | 167420 |
| chr1 | 11998195 | 4.82% | 15852 |
| chr2 | 9490797 | 3.92% | 13523 |
| chr3 | 7467099 | 3.77% | 10721 |
| chr4 | 4118495 | 2.17% | 6515 |
| chr5 | 5998880 | 3.30% | 8948 |
| chr6 | 5849178 | 3.42% | 8996 |
| chr7 | 5555496 | 3.49% | 8355 |
| chr8 | 5190869 | 3.58% | 7544 |
| chr9 | 5700842 | 4.12% | 7462 |
| chr10 | 6296163 | 4.71% | 8786 |
| chr11 | 7148051 | 5.29% | 9183 |
| chr12 | 5783465 | 4.34% | 7923 |
| chr13 | 2714987 | 2.37% | 4268 |
| chr14 | 4058503 | 3.79% | 5535 |
| chr15 | 4194922 | 4.11% | 5721 |
| chr16 | 5045787 | 5.59% | 6183 |
| chr17 | 6926627 | 8.32% | 8145 |
| chr18 | 2335390 | 2.91% | 3502 |
| chr19 | 5294496 | 9.03% | 6265 |
| chr20 | 4141561 | 6.43% | 5328 |
| chr21 | 1280768 | 2.74% | 1857 |
| chr22 | 3346971 | 6.59% | 3833 |
| chrX | 1795543 | 1.15% | 2896 |
| chrY | 38652 | 0.07% | 79 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 167420 | 165 | 17975 | 727.34 | 531 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF953KZN.bed.gz | 3.3 MB | 529ca47ee50bb181721fca0e4a1ea44f |
| ENCFF953KZN.tabix.bed.gz | 1.61 MB | 199bd28aa572b0f65f5f3528c36a9726 |
| ENCFF953KZN.tabix.bed.gz.tbi | 394.65 KB | 8d83c1a7ed5302b729f261f80d1585a4 |
| genomic_resource.yaml | 2.21 KB | b92c566371d36a3bd10206ae8e2ed8ec |
| statistics/ |