Resource

Id Histone_ChIP-seq/ENCSR206CINcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR206CIN [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (74 years)" and target="H3K27me3"]
Description
Labels
  • accession: ENCSR206CIN
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (74 years)
  • date_created: 2021-01-28T04:10:45.427524+00:00
  • date_released: 2021-05-06
  • doi: 10.17989/ENCSR206CIN
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (74 years) with Alzheimer's disease
  • status: released
  • submitter_comment:
  • target: H3K27me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR206CIN float

Histone_ChIP-seq_ENCSR206CIN
Histone_ChIP-seq ENCSR206CIN [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (74 years)" and target="H3K27me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR206CIN [1.62, 13.9]
n
75,422,293
mean
4.4
sd
1.78

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 754222932.34% 61046
chr1 2543041 1.02% 1993
chr2 2408395 0.99% 1844
chr3 962632 0.49% 741
chr4 1288447 0.68% 912
chr5 1609113 0.89% 1103
chr6 2434238 1.43% 1534
chr7 1615621 1.01% 1056
chr8 1426737 0.98% 1149
chr9 1036877 0.75% 720
chr10 1966797 1.47% 1472
chr11 1183963 0.88% 922
chr12 1620908 1.22% 1171
chr13 730067 0.64% 553
chr14 1561797 1.46% 1098
chr15 1240511 1.22% 1071
chr16 1412815 1.56% 1170
chr17 1909718 2.29% 1291
chr18 638729 0.79% 523
chr19 1447966 2.47% 1116
chr20 1225089 1.90% 1029
chr21 534786 1.14% 462
chr22 518890 1.02% 493
chrX 44105156 28.27% 37623
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 61046 260 65586 1235.5 863
global segment-length histogram

Files

Filename Size md5
ENCFF330NSJ.bed.gz 1.12 MB 6fd08670df094bfaca3c563c65dd6a2e
ENCFF330NSJ.tabix.bed.gz 597.1 KB 82de690114ffd50924c8a7da3bb03e5e
ENCFF330NSJ.tabix.bed.gz.tbi 121.61 KB aabb366f2c0eae6a6238d1618ed757cd
genomic_resource.yaml 1.71 KB 3eb9dd3ca52074c48ec7cc3ca1afb479
statistics/