Resource
| Id | Histone_ChIP-seq/ENCSR205SJZ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR205SJZ [biosample_summary="Homo sapiens BLaER1 120 hours after the\ \ sample was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10\ \ ng/mL CSF1" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: 120 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1 output_type: peaks audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-joint-replicate-peak-calling-step-v-1|/analysis-steps/crg-chip-seq-joint-replicate-peak-calling-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-alignment-and-filtering-step-v-1|/analysis-steps/crg-chip-seq-alignment-and-filtering-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-bed-to-bigbed-conversion-step-v-1|/analysis-steps/crg-chip-seq-bed-to-bigbed-conversion-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-peak-calling-and-signal-generation-step-v-1|/analysis-steps/crg-chip-seq-peak-calling-and-signal-generation-step-v-1/} audit_internal_action: Released analysis step version {crg-chip-seq-peak-calling-and-signal-generation-step-v-1-0|/analysis-step-versions/crg-chip-seq-peak-calling-and-signal-generation-step-v-1-0/} has in progress subobject analysis step {crg-chip-seq-peak-calling-and-signal-generation-step-v-1|/analysis-steps/crg-chip-seq-peak-calling-and-signal-generation-step-v-1/} |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR205SJZ | float |
Histone_ChIP-seq_ENCSR205SJZ |
Histone_ChIP-seq ENCSR205SJZ [biosample_summary="Homo sapiens BLaER1 120 hours after the\ \ sample was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10\ \ ng/mL CSF1" and target="H3K4me3"]
|
 |
[1.24, 90.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 56467821 | 1.76% | 46627 |
| chr1 | 5449978 | 2.19% | 4290 |
| chr1_KI270708v1_random | 255 | 0.20% | 1 |
| chr1_KI270709v1_random | 950 | 1.42% | 2 |
| chr1_KI270712v1_random | 4542 | 2.58% | 4 |
| chr1_KI270713v1_random | 1620 | 3.98% | 4 |
| chr2 | 3651589 | 1.51% | 3084 |
| chr3 | 2939777 | 1.48% | 2331 |
| chr3_GL000221v1_random | 891 | 0.57% | 1 |
| chr4 | 2106573 | 1.11% | 1732 |
| chr4_GL000008v2_random | 254 | 0.12% | 1 |
| chr5 | 2661187 | 1.47% | 2152 |
| chr6 | 2904848 | 1.70% | 2191 |
| chr7 | 2694677 | 1.69% | 2235 |
| chr8 | 2239173 | 1.54% | 2015 |
| chr9 | 2247432 | 1.62% | 1846 |
| chr9_KI270717v1_random | 872 | 2.18% | 2 |
| chr9_KI270719v1_random | 422 | 0.24% | 1 |
| chr10 | 2477034 | 1.85% | 2122 |
| chr11 | 2966618 | 2.20% | 2319 |
| chr12 | 3007120 | 2.26% | 2405 |
| chr13 | 1028700 | 0.90% | 815 |
| chr14 | 1769408 | 1.65% | 1420 |
| chr14_GL000009v2_random | 646 | 0.32% | 1 |
| chr14_GL000194v1_random | 1048 | 0.55% | 1 |
| chr14_GL000225v1_random | 1076 | 0.51% | 3 |
| chr14_KI270724v1_random | 448 | 1.13% | 1 |
| chr14_KI270725v1_random | 282 | 0.16% | 1 |
| chr15 | 1882736 | 1.85% | 1627 |
| chr15_KI270727v1_random | 250 | 0.06% | 1 |
| chr16 | 2403460 | 2.66% | 1977 |
| chr16_KI270728v1_random | 251 | 0.01% | 1 |
| chr17 | 3465218 | 4.16% | 2789 |
| chr17_GL000205v2_random | 13663 | 7.36% | 10 |
| chr17_KI270729v1_random | 9887 | 3.52% | 16 |
| chr17_KI270730v1_random | 1308 | 1.16% | 3 |
| chr18 | 845177 | 1.05% | 743 |
| chr19 | 4555845 | 7.77% | 4252 |
| chr20 | 1521795 | 2.36% | 1250 |
| chr21 | 718776 | 1.54% | 639 |
| chr22 | 1292524 | 2.54% | 1037 |
| chr22_KI270731v1_random | 322 | 0.21% | 1 |
| chr22_KI270733v1_random | 3498 | 1.95% | 6 |
| chr22_KI270734v1_random | 253 | 0.15% | 1 |
| chr22_KI270735v1_random | 684 | 1.60% | 2 |
| chr22_KI270736v1_random | 2220 | 1.22% | 6 |
| chr22_KI270737v1_random | 507 | 0.49% | 2 |
| chrUn_GL000195v1 | 4419 | 2.42% | 5 |
| chrUn_GL000214v1 | 441 | 0.32% | 1 |
| chrUn_GL000216v2 | 9438 | 5.34% | 24 |
| chrUn_GL000219v1 | 6999 | 3.91% | 5 |
| chrUn_GL000220v1 | 690 | 0.43% | 2 |
| chrUn_GL000224v1 | 1025 | 0.57% | 3 |
| chrUn_KI270435v1 | 260 | 0.28% | 1 |
| chrUn_KI270438v1 | 7753 | 6.89% | 8 |
| chrUn_KI270442v1 | 3997 | 1.02% | 11 |
| chrUn_KI270589v1 | 265 | 0.60% | 1 |
| chrUn_KI270744v1 | 1930 | 1.15% | 1 |
| chrUn_KI270751v1 | 1983 | 1.32% | 3 |
| chrUn_KI270756v1 | 1129 | 1.42% | 3 |
| chrX | 1543712 | 0.99% | 1193 |
| chrY | 7986 | 0.01% | 23 |
| 3305 contigs with no values (121484151 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 46627 | 250 | 16934 | 1211.05 | 600 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF130XNN.bed.gz | 1.11 MB | 9c0ccf633bc0484b1d8bb0ada62d8285 |
| ENCFF130XNN.tabix.bed.gz | 509.29 KB | 7ed6a027845a6c3369515f6107054400 |
| ENCFF130XNN.tabix.bed.gz.tbi | 197.38 KB | 8942e474922825073616b190824ccb7f |
| genomic_resource.yaml | 3.12 KB | 1c93dc841d58f6073e6359e1712066d3 |
| statistics/ |