Resource

Id Histone_ChIP-seq/ENCSR203XPUcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR203XPU [biosample_summary="Homo sapiens A549" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR203XPU
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0001086/
  • biosample_summary: Homo sapiens A549
  • date_created: 2016-05-25T23:24:00.593804+00:00
  • date_released: 2016-07-21
  • doi: 10.17989/ENCSR203XPU
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR203XPU float

Histone_ChIP-seq_ENCSR203XPU
Histone_ChIP-seq ENCSR203XPU [biosample_summary="Homo sapiens A549" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR203XPU [1.54, 54.6]
n
44,084,224
mean
19.6
sd
9.75

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 440842241.37% 27884
chr1 4157383 1.67% 2601
chr2 3169236 1.31% 2016
chr3 2455705 1.24% 1538
chr4 1756128 0.92% 1109
chr5 2150968 1.18% 1362
chr6 2591828 1.52% 1604
chr7 2194482 1.38% 1431
chr8 1736693 1.20% 1128
chr9 1943944 1.40% 1223
chr10 2001720 1.50% 1315
chr11 2269376 1.68% 1373
chr12 2350875 1.76% 1411
chr13 865333 0.76% 568
chr14 1405109 1.31% 851
chr15 1494522 1.47% 972
chr16 1708025 1.89% 1085
chr17 2582360 3.10% 1563
chr18 745715 0.93% 492
chr19 2540490 4.33% 1678
chr20 1243114 1.93% 805
chr21 390221 0.84% 245
chr22 907865 1.79% 582
chrX 1372385 0.88% 901
chrY 50747 0.09% 31
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 27884 240 28536 1580.99 1296
global segment-length histogram

Files

Filename Size md5
ENCFF535EYL.bed.gz 789.26 KB a40d418e8d855e6caa5b5b29fbe1dc1a
ENCFF535EYL.tabix.bed.gz 330.23 KB 35e582151fda78306a249ec5a09b8501
ENCFF535EYL.tabix.bed.gz.tbi 169.37 KB af431b88c6acede56d23fb21f45c61f9
genomic_resource.yaml 1.59 KB 8a820ef758557aedebaafc7a90f8df83
statistics/