Resource
| Id | Histone_ChIP-seq/ENCSR202XTW |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR202XTW [biosample_summary="Homo sapiens ascending aorta tissue female adult (51 years)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (51 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN255XCJ|/analyses/ENCAN255XCJ/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF061NMR|/files/ENCFF061NMR/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF061NMR|/files/ENCFF061NMR/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 9.39. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR202XTW | float |
Histone_ChIP-seq_ENCSR202XTW |
Histone_ChIP-seq ENCSR202XTW [biosample_summary="Homo sapiens ascending aorta tissue female adult (51 years)" and target="H3K4me1"]
|
 |
[1.6, 6.08] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 19376634 | 0.60% | 37702 |
| chr1 | 2120166 | 0.85% | 3888 |
| chr2 | 1495840 | 0.62% | 2980 |
| chr3 | 1233940 | 0.62% | 2503 |
| chr4 | 547298 | 0.29% | 1188 |
| chr5 | 889520 | 0.49% | 1834 |
| chr6 | 851517 | 0.50% | 1795 |
| chr7 | 785262 | 0.49% | 1610 |
| chr8 | 721837 | 0.50% | 1491 |
| chr9 | 968732 | 0.70% | 1813 |
| chr10 | 1109468 | 0.83% | 2191 |
| chr11 | 1251007 | 0.93% | 2315 |
| chr12 | 940443 | 0.71% | 1851 |
| chr13 | 325670 | 0.28% | 711 |
| chr14 | 665608 | 0.62% | 1270 |
| chr15 | 739253 | 0.72% | 1438 |
| chr16 | 810251 | 0.90% | 1515 |
| chr17 | 1186190 | 1.42% | 2184 |
| chr17_GL000205v2_random | 364 | 0.20% | 1 |
| chr18 | 282873 | 0.35% | 599 |
| chr19 | 949427 | 1.62% | 1701 |
| chr20 | 630786 | 0.98% | 1188 |
| chr21 | 232504 | 0.50% | 454 |
| chr22 | 556124 | 1.09% | 976 |
| chrUn_GL000195v1 | 329 | 0.18% | 1 |
| chrX | 82225 | 0.05% | 205 |
| 3341 contigs with no values (185936013 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 37702 | 210 | 4495 | 513.94 | 424 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF863RIB.bed.gz | 802.7 KB | 5017ed2ee74f3377e8020f1426c22424 |
| ENCFF863RIB.tabix.bed.gz | 395.16 KB | f2fe77063ee123510db41be3c80550fe |
| ENCFF863RIB.tabix.bed.gz.tbi | 160.94 KB | f9e81b322ef784a4dfac4307b9ac06fc |
| genomic_resource.yaml | 2.77 KB | f6bdc03acf27c1ab4734607f1e73d92b |
| statistics/ |