Resource

Id Histone_ChIP-seq/ENCSR202RXTcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR202RXT [biosample_summary="Homo sapiens stomach tissue female embryo (98 days)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR202RXT
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000945/
  • biosample_summary: Homo sapiens stomach tissue female embryo (98 days)
  • date_created: 2015-09-16T21:42:21.866351+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR202RXT
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (98 days)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR202RXT float

Histone_ChIP-seq_ENCSR202RXT
Histone_ChIP-seq ENCSR202RXT [biosample_summary="Homo sapiens stomach tissue female embryo (98 days)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR202RXT [2.08, 91.5]
n
36,014,246
mean
36.3
sd
19.8

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 360142461.12% 27991
chr1 3548566 1.43% 2803
chr2 2450550 1.01% 1876
chr3 2041109 1.03% 1467
chr4 1533620 0.81% 1076
chr5 1732523 0.95% 1234
chr6 2101449 1.23% 1548
chr7 1787561 1.12% 1387
chr8 1354620 0.93% 1050
chr9 1459835 1.05% 1173
chr10 1517574 1.13% 1177
chr11 1968474 1.46% 1493
chr12 1874360 1.41% 1358
chr13 742314 0.65% 575
chr14 1169094 1.09% 888
chr15 1174524 1.15% 906
chr16 1379199 1.53% 1147
chr17 2098926 2.52% 1712
chr18 617203 0.77% 499
chr19 2302898 3.93% 1982
chr20 910041 1.41% 736
chr21 338687 0.73% 295
chr22 735477 1.45% 656
chrX 1175642 0.75% 953
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 27991 173 17977 1286.64 1065
global segment-length histogram

Files

Filename Size md5
ENCFF353TLS.bed.gz 738.02 KB 012414fa94dfc92393864c7dbaf47aca
ENCFF353TLS.tabix.bed.gz 319.94 KB 87efb6a702e253aed96a5df7a2e175e1
ENCFF353TLS.tabix.bed.gz.tbi 154.05 KB 473690c067ddb2c8f5a78ad9d085afec
genomic_resource.yaml 1.71 KB 448d9e7f674336724a4405a8a0c07ee7
statistics/