Resource

Id Histone_ChIP-seq/ENCSR200JVJcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR200JVJ [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue male adult (89 years)" and target="H3K27ac"]
Description
Labels
  • accession: ENCSR200JVJ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue male adult (89 years)
  • date_created: 2021-01-28T04:11:04.203649+00:00
  • date_released: 2021-05-06
  • doi: 10.17989/ENCSR200JVJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (89 years) with mild cognitive impairment
  • status: released
  • submitter_comment:
  • target: H3K27ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR200JVJ float

Histone_ChIP-seq_ENCSR200JVJ
Histone_ChIP-seq ENCSR200JVJ [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue male adult (89 years)" and target="H3K27ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR200JVJ [1.67, 54.9]
n
116,650,319
mean
12.8
sd
9.55

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1166503193.63% 74818
chr1 11827116 4.75% 7414
chr2 8544287 3.53% 5595
chr3 6891595 3.48% 4472
chr4 5054125 2.66% 3133
chr5 5908948 3.25% 4008
chr6 6200417 3.63% 3897
chr7 5479842 3.44% 3670
chr8 4295965 2.96% 2962
chr9 6123337 4.42% 3654
chr10 6054335 4.53% 3685
chr11 7000716 5.18% 4267
chr12 5539769 4.16% 3746
chr13 2856486 2.50% 1855
chr14 4088866 3.82% 2532
chr15 4108608 4.03% 2606
chr16 3970746 4.40% 2610
chr17 6384031 7.67% 4014
chr18 2317289 2.88% 1573
chr19 4623372 7.89% 2926
chr20 3300461 5.12% 2113
chr21 1309566 2.80% 832
chr22 2422416 4.77% 1578
chrX 2296134 1.47% 1640
chrY 51892 0.09% 36
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 74818 210 99712 1559.12 884
global segment-length histogram

Files

Filename Size md5
ENCFF384SYD.bed.gz 1.68 MB b5710526f48cca735e005a615413975f
ENCFF384SYD.tabix.bed.gz 792.06 KB 20b09556f6bda1612eeaf95f106a7294
ENCFF384SYD.tabix.bed.gz.tbi 229.44 KB 3a7769f759e0d84e8ac22083503b8600
genomic_resource.yaml 1.71 KB 56f869055d939f7dd264609589adedce
statistics/