Resource

Id Histone_ChIP-seq/ENCSR198MJKcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR198MJK [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue male adult (89 years)" and target="H3K27me3"]
Description
Labels
  • accession: ENCSR198MJK
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue male adult (89 years)
  • date_created: 2021-01-28T04:10:59.369376+00:00
  • date_released: 2021-05-06
  • doi: 10.17989/ENCSR198MJK
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (89 years) with mild cognitive impairment
  • status: released
  • submitter_comment:
  • target: H3K27me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR198MJK float

Histone_ChIP-seq_ENCSR198MJK
Histone_ChIP-seq ENCSR198MJK [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue male adult (89 years)" and target="H3K27me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR198MJK [1.68, 11.7]
n
28,374,556
mean
4.59
sd
1.91

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 283745560.88% 30594
chr1 2034833 0.82% 2266
chr2 2197481 0.91% 2335
chr3 826490 0.42% 927
chr4 1142385 0.60% 1139
chr5 1690374 0.93% 1714
chr6 2165545 1.27% 2018
chr7 1586664 1.00% 1538
chr8 1403849 0.97% 1598
chr9 884929 0.64% 901
chr10 1967832 1.47% 2210
chr11 1331140 0.99% 1606
chr12 1536013 1.15% 1600
chr13 655183 0.57% 676
chr14 1269491 1.19% 1359
chr15 1251714 1.23% 1483
chr16 1141500 1.26% 1393
chr17 1814706 2.18% 1781
chr18 509079 0.63% 554
chr19 1029153 1.76% 1145
chr20 992486 1.54% 1150
chr21 380755 0.82% 470
chr22 382504 0.75% 515
chrX 179190 0.11% 214
chrY 1260 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 30594 235 57248 927.45 533
global segment-length histogram

Files

Filename Size md5
ENCFF370CQH.bed.gz 560.18 KB a31e6c52812e9ba2699a00d0baeb9139
ENCFF370CQH.tabix.bed.gz 297.92 KB 88908711bc39b0a5a17524da5f942f19
ENCFF370CQH.tabix.bed.gz.tbi 111.12 KB 3e6236b4862a13455ca5bc462ad81aff
genomic_resource.yaml 1.72 KB dea5aa074c04df71000661e6cbe9fd52
statistics/