Resource

Id Histone_ChIP-seq/ENCSR194LMKcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR194LMK [biosample_summary="Homo sapiens with Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (81 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR194LMK
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (81 years)
  • date_created: 2021-04-30T04:18:12.434807+00:00
  • date_released: 2021-06-24
  • doi: 10.17989/ENCSR194LMK
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (81 years) with Cognitive impairment
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR194LMK float

Histone_ChIP-seq_ENCSR194LMK
Histone_ChIP-seq ENCSR194LMK [biosample_summary="Homo sapiens with Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (81 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR194LMK [1.91, 59.1]
n
56,488,872
mean
24.8
sd
13.7

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 564888721.76% 30919
chr1 5435244 2.18% 2922
chr2 3956331 1.63% 2195
chr3 3387608 1.71% 1794
chr4 2395896 1.26% 1305
chr5 2935405 1.62% 1587
chr6 3352874 1.96% 1850
chr7 2766092 1.74% 1581
chr8 2281273 1.57% 1270
chr9 2309886 1.67% 1298
chr10 2490647 1.86% 1382
chr11 3005651 2.22% 1606
chr12 2990355 2.24% 1567
chr13 1341367 1.17% 766
chr14 1795608 1.68% 963
chr15 1752296 1.72% 956
chr16 2137622 2.37% 1198
chr17 3009370 3.61% 1599
chr18 1101782 1.37% 619
chr19 3253674 5.55% 1825
chr20 1407183 2.18% 757
chr21 559767 1.20% 323
chr22 1200635 2.36% 663
chrX 1622306 1.04% 893
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 30919 225 27899 1827 1417
global segment-length histogram

Files

Filename Size md5
ENCFF774BBN.bed.gz 786.89 KB 6b7d42298d8b321c7cd71f285b38b3d7
ENCFF774BBN.tabix.bed.gz 350.73 KB 2e4b832e8c204368b53071527601afd3
ENCFF774BBN.tabix.bed.gz.tbi 187.4 KB bb79f549075561bfe59380f24d0379bf
genomic_resource.yaml 1.7 KB 6738d17850a34356a4a979dec20b4b3e
statistics/