Resource

Id Histone_ChIP-seq/ENCSR190FSScontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR190FSS [biosample_summary="Homo sapiens with Alzheimer''s disease, Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K27me3"]
Description
Labels
  • accession: ENCSR190FSS
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with Alzheimer's disease, Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)
  • date_created: 2021-08-25T18:07:05.076870+00:00
  • date_released: 2021-09-21
  • doi: 10.17989/ENCSR190FSS
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (90 or above years) with Alzheimer's disease, Cognitive impairment
  • status: released
  • submitter_comment:
  • target: H3K27me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR190FSS float

Histone_ChIP-seq_ENCSR190FSS
Histone_ChIP-seq ENCSR190FSS [biosample_summary="Homo sapiens with Alzheimer''s disease, Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K27me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR190FSS [1.45, 12.7]
n
68,397,379
mean
4.27
sd
1.72

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 683973792.13% 69341
chr1 2433099 0.98% 2385
chr2 2187427 0.90% 2045
chr3 819757 0.41% 792
chr4 1194604 0.63% 1014
chr5 1637487 0.90% 1415
chr6 2103785 1.23% 1663
chr7 1578137 0.99% 1322
chr8 1265392 0.87% 1258
chr9 1004741 0.73% 941
chr10 1891742 1.41% 1900
chr11 1113028 0.82% 1109
chr12 1512611 1.13% 1406
chr13 766982 0.67% 726
chr14 1592637 1.49% 1539
chr15 1327674 1.30% 1453
chr16 1555470 1.72% 1716
chr17 1891027 2.27% 1623
chr18 644862 0.80% 664
chr19 1630526 2.78% 1684
chr20 1325659 2.06% 1382
chr21 673906 1.44% 705
chr22 647440 1.27% 808
chrX 37599386 24.10% 39791
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 69341 220 89902 986.39 700
global segment-length histogram

Files

Filename Size md5
ENCFF082HRF.bed.gz 1.24 MB 226467b0ec05367537b20cdc1518ccd0
ENCFF082HRF.tabix.bed.gz 658.74 KB 8414bdd1500756f1ac0c8760f03f04e0
ENCFF082HRF.tabix.bed.gz.tbi 138.01 KB 89fc2bc865e57106e092e434caf4fa75
genomic_resource.yaml 1.87 KB 83ffb7f422679101b5d1a6e4beb11dc8
statistics/