Resource
| Id | Histone_ChIP-seq/ENCSR189XIE |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR189XIE [biosample_summary="Homo sapiens smooth muscle cell originated from H9" and target="H4K20me1"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: female embryo (5 days) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN675YRZ|/analyses/ENCAN675YRZ/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN675YRZ|/analyses/ENCAN675YRZ/} has in progress subobject document {503fd0ee-c7e4-40da-b68a-984110efc5a0|/documents/503fd0ee-c7e4-40da-b68a-984110efc5a0/} audit_warning: Processed alignments file {ENCFF860HNZ|/files/ENCFF860HNZ/} processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline has 35335851 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H4K20me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR189XIE | float |
Histone_ChIP-seq_ENCSR189XIE |
Histone_ChIP-seq ENCSR189XIE [biosample_summary="Homo sapiens smooth muscle cell originated from H9" and target="H4K20me1"]
|
 |
[1.53, 23] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 148321867 | 4.61% | 81582 |
| chr1 | 14242519 | 5.72% | 7885 |
| chr2 | 11989009 | 4.95% | 6522 |
| chr3 | 10560777 | 5.33% | 5705 |
| chr4 | 5620634 | 2.95% | 3523 |
| chr5 | 8050527 | 4.43% | 4270 |
| chr6 | 7168110 | 4.20% | 4235 |
| chr7 | 8303054 | 5.21% | 4533 |
| chr8 | 5865870 | 4.04% | 3321 |
| chr9 | 6684993 | 4.83% | 3703 |
| chr10 | 8179300 | 6.11% | 4387 |
| chr11 | 7196613 | 5.33% | 4062 |
| chr12 | 6728701 | 5.05% | 3886 |
| chr13 | 3434505 | 3.00% | 1947 |
| chr14 | 5160582 | 4.82% | 2696 |
| chr15 | 5637152 | 5.53% | 3055 |
| chr16 | 6145226 | 6.80% | 3242 |
| chr17 | 7953022 | 9.55% | 4176 |
| chr18 | 2990735 | 3.72% | 1798 |
| chr19 | 4898510 | 8.36% | 2441 |
| chr20 | 3890149 | 6.04% | 1750 |
| chr21 | 1643420 | 3.52% | 821 |
| chr22 | 3855754 | 7.59% | 2058 |
| chrX | 2122705 | 1.36% | 1566 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 81582 | 190 | 118777 | 1818.07 | 840 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF111RBO.bed.gz | 1.82 MB | 24a10dc101dc81d6499e1003c4798d3f |
| ENCFF111RBO.tabix.bed.gz | 858.53 KB | 91ac89b3ae7968b7e2233d2ba51fc9cd |
| ENCFF111RBO.tabix.bed.gz.tbi | 128.42 KB | 43918e4a993e6eaf1896df01c6024cc7 |
| genomic_resource.yaml | 2.21 KB | 6b80b47dedf0f41c0979c00a199ef31c |
| statistics/ |